Guide to the Human Genome
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Name: GRRP1 Sequence: fasta or formatted (271aa) NCBI GI: 117956393
Description:

glycine/arginine rich protein 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         33           2
 C cysteine            2.2          6           1
 D aspartate           4.1         11           1
 E glutamate           5.9         16           1
 F phenylalanine       1.8          5           2
 G glycine            10.7         29           5
 H histidine           0.7          2           1
 I isoleucine          1.1          3           1
 K lysine              3.3          9           1
 L leucine             6.6         18           2
 M methionine          0.4          1           1
 N asparagine          1.8          5           1
 P proline            12.5         34           3
 Q glutamine           3.3          9           1
 R arginine           11.8         32           2
 S serine             10.0         27           2
 T threonine           3.3          9           1
 V valine              5.2         14           2
 W tryptophan          1.5          4           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glycine/arginine rich protein 1 
FAM110C               0.163   hypothetical protein LOC642273 
FAM110A               0.150   hypothetical protein LOC83541 
FAM110A               0.150   hypothetical protein LOC83541 
FAM110A               0.150   hypothetical protein LOC83541 
FAM110B               0.056   hypothetical protein LOC90362 
SP8                   0.034   Sp8 transcription factor isoform 1 
LOC100292845          0.026   PREDICTED: hypothetical protein 
LOC100289230          0.026   PREDICTED: hypothetical protein XP_002342600 
ZFPM1                 0.026   zinc finger protein, multitype 1 
KDM2B                 0.024   F-box and leucine-rich repeat protein 10 isoform a [...
MAST3                 0.024   microtubule associated serine/threonine kinase 3 [H...
KHSRP                 0.022   KH-type splicing regulatory protein 
KIAA0284              0.022   hypothetical protein LOC283638 isoform 2 
KIAA0284              0.022   hypothetical protein LOC283638 isoform 1 
C2orf55               0.022   hypothetical protein LOC343990 
DACT3                 0.022   thymus expressed gene 3-like 
LOC100291925          0.022   PREDICTED: hypothetical protein XP_002345110 
LOC100292407          0.022   PREDICTED: hypothetical protein 
LOC100291392          0.022   PREDICTED: hypothetical protein XP_002347851 
LOC100287042          0.022   PREDICTED: hypothetical protein XP_002343584 
GAR1                  0.022   nucleolar protein family A, member 1 
GAR1                  0.022   nucleolar protein family A, member 1 
ANKRD17               0.022   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.022   ankyrin repeat domain protein 17 isoform b 
LOC100292082          0.021   PREDICTED: hypothetical protein XP_002345881 
LOC646396             0.021   PREDICTED: similar to hCG2042704 
LOC646396             0.021   PREDICTED: similar to hCG2042704 
ARID1A                0.021   AT rich interactive domain 1A isoform a 
ARID1A                0.021   AT rich interactive domain 1A isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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