Guide to the Human Genome
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Name: LOC730130 Sequence: fasta or formatted (380aa) NCBI GI: 209862782
Description:

hypothetical protein LOC730130

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         35           3
 C cysteine            1.8          7           1
 D aspartate           2.6         10           1
 E glutamate           2.4          9           1
 F phenylalanine       6.6         25           3
 G glycine            11.1         42           3
 H histidine           2.6         10           1
 I isoleucine          2.1          8           1
 K lysine              1.1          4           1
 L leucine            12.4         47           3
 M methionine          2.1          8           1
 N asparagine          1.6          6           1
 P proline             6.8         26           2
 Q glutamine           6.1         23          12
 R arginine            8.7         33           4
 S serine              6.6         25           2
 T threonine           3.4         13           2
 V valine              5.8         22           2
 W tryptophan          2.4          9           1
 Y tyrosine            4.7         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC730130 
C14orf83              0.082   hypothetical protein LOC161145 
HTT                   0.020   huntingtin 
NUMBL                 0.020   numb homolog (Drosophila)-like 
NCOA3                 0.020   nuclear receptor coactivator 3 isoform a 
NCOA3                 0.020   nuclear receptor coactivator 3 isoform b 
ZFHX3                 0.020   AT-binding transcription factor 1 
MAGI1                 0.020   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.020   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.020   membrane associated guanylate kinase, WW and PDZ dom...
RUNX2                 0.020   runt-related transcription factor 2 isoform b [Homo...
RUNX2                 0.020   runt-related transcription factor 2 isoform a [Homo...
RUNX2                 0.020   runt-related transcription factor 2 isoform c 
SMARCA2               0.020   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.020   SWI/SNF-related matrix-associated actin-dependent re...
ATXN2                 0.018   ataxin 2 
NCOR2                 0.018   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.018   nuclear receptor co-repressor 2 isoform 1 
ATN1                  0.018   atrophin-1 
ATN1                  0.018   atrophin-1 
PHC1                  0.018   polyhomeotic 1-like 
HLX                   0.018   H2.0-like homeobox 
FMN2                  0.018   formin 2 
MED15                 0.018   mediator complex subunit 15 isoform a 
MED15                 0.018   mediator complex subunit 15 isoform b 
C6orf174              0.017   hypothetical protein LOC387104 
CREBBP                0.017   CREB binding protein isoform b 
CREBBP                0.017   CREB binding protein isoform a 
FRMPD3                0.017   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.017   PREDICTED: FERM and PDZ domain containing 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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