Guide to the Human Genome
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Name: C17orf63 Sequence: fasta or formatted (562aa) NCBI GI: 117306178
Description:

hypothetical protein LOC55731

Not currently referenced in the text

Other entries for this name:
alt mRNA {562aa} hypothetical protein LOC55731
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         66           3
 C cysteine            1.4          8           1
 D aspartate           2.8         16           1
 E glutamate           1.8         10           1
 F phenylalanine       1.8         10           1
 G glycine             6.9         39           3
 H histidine           5.2         29           1
 I isoleucine          2.8         16           1
 K lysine              3.2         18           2
 L leucine             9.4         53           2
 M methionine          2.5         14           1
 N asparagine          3.7         21           2
 P proline            12.8         72           3
 Q glutamine           8.5         48           2
 R arginine            3.6         20           2
 S serine              7.5         42           2
 T threonine           7.1         40           2
 V valine              4.4         25           2
 W tryptophan          0.5          3           1
 Y tyrosine            2.1         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55731 
C17orf63              1.000   hypothetical protein LOC55731 
C12orf34              0.112   hypothetical protein LOC84915 
TCERG1                0.030   transcription elongation regulator 1 isoform 1 [Homo...
TCERG1                0.030   transcription elongation regulator 1 isoform 2 [Homo...
FLJ22184              0.028   PREDICTED: hypothetical protein FLJ22184 
LOC284297             0.022   hypothetical protein LOC284297 
WNK1                  0.021   WNK lysine deficient protein kinase 1 
NACA                  0.019   nascent polypeptide-associated complex alpha subuni...
MED15                 0.018   mediator complex subunit 15 isoform a 
WNK2                  0.017   WNK lysine deficient protein kinase 2 
MED15                 0.017   mediator complex subunit 15 isoform b 
POU6F2                0.016   POU domain, class 6, transcription factor 2 
RERE                  0.016   atrophin-1 like protein isoform b 
RERE                  0.016   atrophin-1 like protein isoform a 
RERE                  0.016   atrophin-1 like protein isoform a 
CHD7                  0.015   chromodomain helicase DNA binding protein 7 
AUTS2                 0.015   autism susceptibility candidate 2 isoform 1 
BAZ2A                 0.015   bromodomain adjacent to zinc finger domain, 2A [Homo...
LOC100288473          0.015   PREDICTED: hypothetical protein XP_002343336 
PHLDA1                0.015   pleckstrin homology-like domain, family A, member 1 ...
ATN1                  0.014   atrophin-1 
ATN1                  0.014   atrophin-1 
MAVS                  0.014   virus-induced signaling adapter 
AUTS2                 0.014   autism susceptibility candidate 2 isoform 2 
BAT3                  0.014   HLA-B associated transcript-3 isoform b 
BAT3                  0.014   HLA-B associated transcript-3 isoform b 
BAT3                  0.014   HLA-B associated transcript-3 isoform b 
BAT3                  0.014   HLA-B associated transcript-3 isoform a 
ARID1A                0.014   AT rich interactive domain 1A isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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