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Search of human proteins with 169173200
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169173200 PREDICTED: hypothetical protein LOC100128993 [Homo
sapiens]
(143 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169173200 PREDICTED: hypothetical protein LOC100128993 [Homo ... 295 1e-80
gi|169172442 PREDICTED: hypothetical protein LOC100128993 [Homo ... 295 1e-80
gi|169172830 PREDICTED: hypothetical protein LOC100128993 [Homo ... 295 1e-80
gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens] 32 0.18
gi|24308237 phosphatidylinositol transfer protein, membrane-asso... 32 0.24
gi|94721354 methylenetetrahydrofolate dehydrogenase 2 precursor ... 29 1.5
gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens] 28 2.6
gi|130502140 NEZHA isoform 2 [Homo sapiens] 28 2.6
gi|122937255 NEZHA isoform 1 [Homo sapiens] 28 2.6
gi|166795252 hypothetical protein LOC23359 [Homo sapiens] 27 4.4
gi|4506583 replication protein A1, 70kDa [Homo sapiens] 27 5.8
gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens] 27 5.8
gi|239755739 PREDICTED: hypothetical protein [Homo sapiens] 26 9.9
gi|239750250 PREDICTED: hypothetical protein [Homo sapiens] 26 9.9
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 26 9.9
gi|134031945 SCO-spondin [Homo sapiens] 26 9.9
>gi|169173200 PREDICTED: hypothetical protein LOC100128993 [Homo
sapiens]
Length = 143
Score = 295 bits (754), Expect = 1e-80
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MSAALHQEWFMSLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTT 60
MSAALHQEWFMSLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTT
Sbjct: 1 MSAALHQEWFMSLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTT 60
Query: 61 DPKRKQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHR 120
DPKRKQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHR
Sbjct: 61 DPKRKQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHR 120
Query: 121 SGSQGALVLVPTLPLSCLMATGE 143
SGSQGALVLVPTLPLSCLMATGE
Sbjct: 121 SGSQGALVLVPTLPLSCLMATGE 143
>gi|169172442 PREDICTED: hypothetical protein LOC100128993 [Homo
sapiens]
Length = 143
Score = 295 bits (754), Expect = 1e-80
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MSAALHQEWFMSLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTT 60
MSAALHQEWFMSLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTT
Sbjct: 1 MSAALHQEWFMSLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTT 60
Query: 61 DPKRKQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHR 120
DPKRKQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHR
Sbjct: 61 DPKRKQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHR 120
Query: 121 SGSQGALVLVPTLPLSCLMATGE 143
SGSQGALVLVPTLPLSCLMATGE
Sbjct: 121 SGSQGALVLVPTLPLSCLMATGE 143
>gi|169172830 PREDICTED: hypothetical protein LOC100128993 [Homo
sapiens]
Length = 143
Score = 295 bits (754), Expect = 1e-80
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MSAALHQEWFMSLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTT 60
MSAALHQEWFMSLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTT
Sbjct: 1 MSAALHQEWFMSLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTT 60
Query: 61 DPKRKQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHR 120
DPKRKQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHR
Sbjct: 61 DPKRKQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHR 120
Query: 121 SGSQGALVLVPTLPLSCLMATGE 143
SGSQGALVLVPTLPLSCLMATGE
Sbjct: 121 SGSQGALVLVPTLPLSCLMATGE 143
>gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]
Length = 981
Score = 32.0 bits (71), Expect = 0.18
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 20/82 (24%)
Query: 29 NLLSISLALAPGHTTQVSNESLILKNKRRLTTDPKRKQEYNLRSWWATRGQRLTSIHTAL 88
NLL+ L+ A G + L +RRL P R W A+ G RL ++ AL
Sbjct: 598 NLLTQGLSCAWGAAVALGTLCLC---RRRLLDGP--------RGWDASPGPRLLAVAGAL 646
Query: 89 RLASCG---------YPGPGRV 101
L + G YPGPGRV
Sbjct: 647 GLLASGLQLAAALWLYPGPGRV 668
>gi|24308237 phosphatidylinositol transfer protein,
membrane-associated 2 [Homo sapiens]
Length = 1349
Score = 31.6 bits (70), Expect = 0.24
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 34 SLALAPGHTTQVSNESLILKNKRRLTTDPKRKQEYNLRSWWATRGQRLTSIHTALRLASC 93
+++L+P V + L+ + + TD L+ R R T+ ALR S
Sbjct: 1219 AISLSPMQIYIVGRPTKKLQQQCQFITDGYAAHLAQLKYSHRARPARNTATRMALRKGSF 1278
Query: 94 GYPGPGRVLQSR-------SRKGTGCSHRTSCHRSGSQG 125
G PG G L+SR S + +G SHR +S + G
Sbjct: 1279 GLPGQGDFLRSRNHLLRTISAQPSGPSHRHERTQSQADG 1317
>gi|94721354 methylenetetrahydrofolate dehydrogenase 2 precursor
[Homo sapiens]
Length = 350
Score = 28.9 bits (63), Expect = 1.5
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 12 SLQEEKSGAASNPSHWGNLLSISLALAPGHTTQVSNESLILKNKRRLTTDPKRKQEYNLR 71
SL + P+H S SL L P H V NE++++ R+L K++ +
Sbjct: 5 SLMSALAARLLQPAH-----SCSLRLRPFHLAAVRNEAVVISG-RKLAQQIKQEVRQEVE 58
Query: 72 SWWATRGQR 80
W A+ +R
Sbjct: 59 EWVASGNKR 67
>gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens]
Length = 358
Score = 28.1 bits (61), Expect = 2.6
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 83 SIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHRSGSQGA 126
S H A L + G PGPG L KG G +H SG GA
Sbjct: 234 SPHPAPALGAAGLPGPGSAL-----KGLGAAH-PDLRASGGSGA 271
>gi|130502140 NEZHA isoform 2 [Homo sapiens]
Length = 1249
Score = 28.1 bits (61), Expect = 2.6
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 65 KQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHRSGSQ 124
+QEY R+ + + + + LR + G GPGR + +R +GC ++ RS ++
Sbjct: 979 RQEYERRA----QLKLMDDLDKVLRPRAAGSGGPGRGGRRATRPRSGCCDDSALARSPAR 1034
Query: 125 GAL 127
G L
Sbjct: 1035 GLL 1037
>gi|122937255 NEZHA isoform 1 [Homo sapiens]
Length = 1276
Score = 28.1 bits (61), Expect = 2.6
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 65 KQEYNLRSWWATRGQRLTSIHTALRLASCGYPGPGRVLQSRSRKGTGCSHRTSCHRSGSQ 124
+QEY R+ + + + + LR + G GPGR + +R +GC ++ RS ++
Sbjct: 1006 RQEYERRA----QLKLMDDLDKVLRPRAAGSGGPGRGGRRATRPRSGCCDDSALARSPAR 1061
Query: 125 GAL 127
G L
Sbjct: 1062 GLL 1064
>gi|166795252 hypothetical protein LOC23359 [Homo sapiens]
Length = 539
Score = 27.3 bits (59), Expect = 4.4
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 96 PGPGRVLQSRS--------RKGTGCSHRTSCHRSGSQGALVLVP 131
PGPGRV +S S G SHR SC + G VP
Sbjct: 389 PGPGRVSRSTSDPTLCTSSMAGDASSHRPSCSQDLEAGLSEAVP 432
>gi|4506583 replication protein A1, 70kDa [Homo sapiens]
Length = 616
Score = 26.9 bits (58), Expect = 5.8
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 35 LALAPGHTTQVSNESLILKNKRRLTTDPKRKQEYNLRSWWATRGQRLTSI 84
LA+ + SL + + + +P + Y LR W+ GQ L +
Sbjct: 376 LAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGV 425
>gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens]
Length = 1316
Score = 26.9 bits (58), Expect = 5.8
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 95 YPGPGRVLQSRSRKGTG-CSHRTSCHRSG 122
+PG G L R+ G CSH S HRSG
Sbjct: 999 HPGHGDRLSPGERRSLGRCSHHHSRHRSG 1027
>gi|239755739 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 26.2 bits (56), Expect = 9.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 96 PGPGRV--LQSRSRKGTGCSHRTSCHRSGSQGA 126
PGPGRV Q+R+R+G G R + G + A
Sbjct: 47 PGPGRVRAAQARARRGGGARERPAEGARGPRAA 79
>gi|239750250 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 26.2 bits (56), Expect = 9.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 96 PGPGRV--LQSRSRKGTGCSHRTSCHRSGSQGA 126
PGPGRV Q+R+R+G G R + G + A
Sbjct: 47 PGPGRVRAAQARARRGGGARERPAEGARGPRAA 79
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 26.2 bits (56), Expect = 9.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 96 PGPGRV--LQSRSRKGTGCSHRTSCHRSGSQGA 126
PGPGRV Q+R+R+G G R + G + A
Sbjct: 47 PGPGRVRAAQARARRGGGARERPAEGARGPRAA 79
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 26.2 bits (56), Expect = 9.9
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 92 SCGYPGPGRVLQSRSRKGTGCSHRTSCHRSGSQGALVLVPTLPLSCLMAT 141
SCG G QSR R T S C SQ P+ P CL T
Sbjct: 4174 SCGPRGQ----QSRFRSSTSGSWAPECREEQSQSQPCPQPSCPPLCLQGT 4219
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.127 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,148,193
Number of Sequences: 37866
Number of extensions: 259880
Number of successful extensions: 707
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 17
length of query: 143
length of database: 18,247,518
effective HSP length: 92
effective length of query: 51
effective length of database: 14,763,846
effective search space: 752956146
effective search space used: 752956146
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.