Guide to the Human Genome
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Name: LOC100128993 Sequence: fasta or formatted (143aa) NCBI GI: 169172830
Description:

PREDICTED: hypothetical protein LOC100128993

Not currently referenced in the text

Other entries for this name:
alt mRNA {143aa} PREDICTED: hypothetical protein LOC100128993
alt mRNA {143aa} PREDICTED: hypothetical protein LOC100128993
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         11           2
 C cysteine            2.8          4           1
 D aspartate           0.7          1           1
 E glutamate           4.2          6           2
 F phenylalanine       0.7          1           1
 G glycine             8.4         12           1
 H histidine           4.2          6           1
 I isoleucine          2.1          3           1
 K lysine              4.2          6           1
 L leucine            13.3         19           2
 M methionine          2.1          3           1
 N asparagine          3.5          5           1
 P proline             4.9          7           1
 Q glutamine           4.9          7           1
 R arginine            8.4         12           2
 S serine             13.3         19           1
 T threonine           7.7         11           2
 V valine              2.8          4           1
 W tryptophan          2.8          4           2
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC100128993 
LOC100128993          1.000   PREDICTED: hypothetical protein LOC100128993 
LOC100128993          1.000   PREDICTED: hypothetical protein LOC100128993 
PRRT3                 0.026   proline-rich transmembrane protein 3 
PITPNM2               0.026   phosphatidylinositol transfer protein, membrane-asso...
MTHFD2                0.015   methylenetetrahydrofolate dehydrogenase 2 precursor ...
CEBPA                 0.011   CCAAT/enhancer binding protein alpha 
KIAA1543              0.011   NEZHA isoform 2 
KIAA1543              0.011   NEZHA isoform 1 
FAM189A1              0.007   hypothetical protein LOC23359 
RPA1                  0.007   replication protein A1, 70kDa 
USP42                 0.007   ubiquitin specific peptidase 42 
LOC728650             0.004   PREDICTED: hypothetical protein 
LOC728650             0.004   PREDICTED: hypothetical protein 
LOC728650             0.004   PREDICTED: hypothetical protein 
SSPO                  0.004   SCO-spondin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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