Guide to the Human Genome
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Name: LOC100128056 Sequence: fasta or formatted (74aa) NCBI GI: 169171448
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {74aa} PREDICTED: hypothetical protein
alt mRNA {74aa} PREDICTED: hypothetical protein
alt mRNA {74aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8          5           1
 C cysteine           12.2          9           2
 D aspartate           0.0          0           0
 E glutamate           1.4          1           1
 F phenylalanine       2.7          2           1
 G glycine             1.4          1           1
 H histidine           5.4          4           1
 I isoleucine          4.1          3           2
 K lysine              2.7          2           1
 L leucine             6.8          5           2
 M methionine          4.1          3           1
 N asparagine          2.7          2           1
 P proline            12.2          9           2
 Q glutamine           6.8          5           2
 R arginine            6.8          5           1
 S serine             10.8          8           2
 T threonine           2.7          2           1
 V valine              4.1          3           1
 W tryptophan          5.4          4           2
 Y tyrosine            1.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128056          1.000   PREDICTED: hypothetical protein 
LOC100128056          1.000   PREDICTED: hypothetical protein 
LOC100128056          1.000   PREDICTED: hypothetical protein 
FAM100B               0.047   hypothetical protein LOC283991 
LOC100293087          0.033   PREDICTED: hypothetical protein 
LOC284889             0.027   PREDICTED: hypothetical protein 
LOC100292408          0.027   PREDICTED: hypothetical protein 
LOC284889             0.027   PREDICTED: hypothetical protein 
LOC284889             0.027   PREDICTED: hypothetical protein 
WDR87                 0.020   NYD-SP11 protein 
EN1                   0.013   engrailed homeobox 1 
KRTAP2-1              0.007   keratin associated protein KRTAP2.1A 
KRTAP2-4              0.007   keratin associated protein 2-4 
KRTAP2-2              0.007   keratin associated protein 2-2 
MYO15A                0.007   myosin XV 
LOC730755             0.007   PREDICTED: similar to keratin associated protein 2-...
SHANK3                0.007   SH3 and multiple ankyrin repeat domains 3 
PHF13                 0.007   PHD finger protein 13 
USO1                  0.007   USO1 homolog, vesicle docking protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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