Guide to the Human Genome
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Name: LOC100292408 Sequence: fasta or formatted (221aa) NCBI GI: 239754993
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         23           1
 C cysteine            1.8          4           1
 D aspartate           1.4          3           1
 E glutamate           2.7          6           1
 F phenylalanine       2.7          6           1
 G glycine             3.6          8           1
 H histidine           3.6          8           1
 I isoleucine          1.8          4           1
 K lysine              1.4          3           1
 L leucine            10.0         22           2
 M methionine          0.9          2           1
 N asparagine          0.5          1           1
 P proline            20.8         46           3
 Q glutamine           4.1          9           1
 R arginine           11.8         26           2
 S serine             12.2         27           2
 T threonine           4.5         10           1
 V valine              2.3          5           2
 W tryptophan          2.3          5           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
FLJ22184              0.049   PREDICTED: hypothetical protein FLJ22184 
MLL2                  0.047   myeloid/lymphoid or mixed-lineage leukemia 2 
FLJ22184              0.045   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.045   PREDICTED: hypothetical protein LOC80164 
MAP1S                 0.045   BPY2 interacting protein 1 
GLTSCR1               0.045   glioma tumor suppressor candidate region gene 1 [Ho...
PRR12                 0.045   proline rich 12 
FAM53C                0.043   hypothetical protein LOC51307 
FAM53C                0.043   hypothetical protein LOC51307 
ACR                   0.043   acrosin precursor 
SYNPO2L               0.043   synaptopodin 2-like isoform a 
SYNPO2L               0.043   synaptopodin 2-like isoform b 
LOC645529             0.043   PREDICTED: similar to Putative acrosin-like proteas...
MICALL1               0.043   molecule interacting with Rab13 
SAMD1                 0.043   sterile alpha motif domain containing 1 
PPP1R13L              0.040   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.040   protein phosphatase 1, regulatory subunit 13 like [H...
LOC342346             0.040   hypothetical protein LOC342346 
MINK1                 0.040   misshapen/NIK-related kinase isoform 4 
ATOH8                 0.038   atonal homolog 8 
CASKIN1               0.038   CASK interacting protein 1 
WIPF3                 0.038   WAS/WASL interacting protein family, member 3 [Homo...
PRB1                  0.038   proline-rich protein BstNI subfamily 1 isoform 1 pre...
RICH2                 0.038   Rho GTPase-activating protein RICH2 
MLXIPL                0.038   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.038   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.038   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.038   Williams Beuren syndrome chromosome region 14 isofor...
SRRM1                 0.038   serine/arginine repetitive matrix 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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