Guide to the Human Genome
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Name: LOC100134123 Sequence: fasta or formatted (102aa) NCBI GI: 169169118
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            25.5         26           3
 C cysteine            1.0          1           1
 D aspartate           2.9          3           1
 E glutamate           6.9          7           1
 F phenylalanine       1.0          1           1
 G glycine             4.9          5           1
 H histidine           5.9          6           2
 I isoleucine          2.0          2           1
 K lysine              0.0          0           0
 L leucine             8.8          9           2
 M methionine          2.9          3           1
 N asparagine          2.9          3           1
 P proline             7.8          8           2
 Q glutamine           6.9          7           1
 R arginine            7.8          8           3
 S serine              1.0          1           1
 T threonine           2.0          2           1
 V valine              9.8         10           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
TBL1X                 0.028   transducin beta-like 1X isoform b 
TBL1X                 0.028   transducin beta-like 1X isoform b 
TBL1X                 0.028   transducin beta-like 1X isoform a 
TBL1X                 0.028   transducin beta-like 1X isoform a 
TBL1Y                 0.028   transducin beta-like 1Y 
TBL1Y                 0.028   transducin beta-like 1Y 
TBL1Y                 0.028   transducin beta-like 1Y 
LOC100289231          0.023   PREDICTED: hypothetical protein 
LOC100289231          0.023   PREDICTED: hypothetical protein XP_002342622 
MUC16                 0.017   mucin 16 
TBL1XR1               0.017   transducin (beta)-like 1 X-linked receptor 1 
KCNQ3                 0.017   potassium voltage-gated channel KQT-like protein 3 [H...
VWA5B1                0.017   von Willebrand factor A domain containing 5B1 [Homo...
FAM48B1               0.017   hypothetical protein LOC100130302 
LOC729154             0.011   PREDICTED: hypothetical protein 
LOC729154             0.011   PREDICTED: hypothetical protein 
PPP1R9B               0.011   protein phosphatase 1, regulatory subunit 9B 
VSTM2B                0.006   V-set and transmembrane domain containing 2B 
VSTM2B                0.006   PREDICTED: V-set and transmembrane domain containin...
VSTM2B                0.006   PREDICTED: V-set and transmembrane domain containin...
VSTM2B                0.006   PREDICTED: V-set and transmembrane domain containin...
USP11                 0.006   ubiquitin specific peptidase 11 
NKD1                  0.006   naked cuticle homolog 1 
RUNX2                 0.006   runt-related transcription factor 2 isoform b [Homo...
RUNX2                 0.006   runt-related transcription factor 2 isoform a [Homo...
RUNX2                 0.006   runt-related transcription factor 2 isoform c 
EVX2                  0.006   even-skipped homeobox 2 
SOX3                  0.006   SRY (sex determining region Y)-box 3 
ASCL2                 0.006   achaete-scute complex homolog-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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