Guide to the Human Genome
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Name: LOC100130472 Sequence: fasta or formatted (328aa) NCBI GI: 169168282
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {290aa} PREDICTED: hypothetical protein
alt prot {370aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         18           2
 C cysteine            4.3         14           2
 D aspartate           4.6         15           2
 E glutamate           6.4         21           3
 F phenylalanine       3.4         11           2
 G glycine             9.5         31           3
 H histidine           1.8          6           1
 I isoleucine          1.8          6           2
 K lysine              2.4          8           2
 L leucine            11.6         38           2
 M methionine          0.9          3           1
 N asparagine          0.9          3           1
 P proline             9.1         30           1
 Q glutamine           5.2         17           3
 R arginine            5.2         17           1
 S serine             11.6         38           2
 T threonine           7.6         25           2
 V valine              3.0         10           1
 W tryptophan          3.7         12           1
 Y tyrosine            1.5          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130472          0.969   PREDICTED: hypothetical protein 
LOC100130472          0.785   PREDICTED: hypothetical protein 
HAUS8                 0.015   sarcoma antigen NY-SAR-48 isoform b 
HAUS8                 0.015   sarcoma antigen NY-SAR-48 isoform a 
PSD4                  0.012   pleckstrin and Sec7 domain containing 4 
RIN1                  0.012   ras inhibitor RIN1 
BCL6B                 0.010   B-cell CLL/lymphoma 6, member B (zinc finger protein...
C16orf59              0.010   hypothetical protein LOC80178 
METTL1                0.009   methyltransferase-like protein 1 isoform c 
PDZRN3                0.009   PDZ domain containing ring finger 3 
ABCC6                 0.007   ATP-binding cassette, sub-family C, member 6 isofor...
JAZF1                 0.007   JAZF zinc finger 1 
LOC100292715          0.007   PREDICTED: hypothetical protein 
C2orf68               0.007   hypothetical protein LOC388969 
AFTPH                 0.007   aftiphilin protein isoform a 
TREML2                0.007   triggering receptor expressed on myeloid cells-like...
EPOR                  0.006   erythropoietin receptor precursor 
ADAMTS13              0.006   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.006   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.006   ADAM metallopeptidase with thrombospondin type 1 mot...
ZNF169                0.006   zinc finger protein 169 
PSCA                  0.006   prostate stem cell antigen preproprotein 
SENP3                 0.006   SUMO1/sentrin/SMT3 specific protease 3 
LOC100130599          0.004   PREDICTED: hypothetical protein 
LOC100130599          0.004   PREDICTED: similar to Keratin-associated protein 10...
MGC50722              0.004   hypothetical protein LOC399693 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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