Guide to the Human Genome
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Name: JAZF1 Sequence: fasta or formatted (243aa) NCBI GI: 91822911
Description:

JAZF zinc finger 1

Referenced in:

Stem Cells and Early Development
Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         13           3
 C cysteine            2.9          7           1
 D aspartate           3.7          9           1
 E glutamate           7.4         18           3
 F phenylalanine       3.7          9           2
 G glycine             5.8         14           2
 H histidine           3.7          9           2
 I isoleucine          5.8         14           2
 K lysine              6.6         16           3
 L leucine             5.3         13           1
 M methionine          2.1          5           1
 N asparagine          3.7          9           1
 P proline             7.4         18           2
 Q glutamine           3.7          9           2
 R arginine            6.2         15           2
 S serine             11.9         29           3
 T threonine           7.4         18           2
 V valine              4.1         10           1
 W tryptophan          0.4          1           1
 Y tyrosine            2.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   JAZF zinc finger 1 
ZNF654                0.063   zinc finger protein 654 
ZNF143                0.046   zinc finger protein 143 
ZNF76                 0.042   zinc finger protein 76 (expressed in testis) 
MAZ                   0.042   MYC-associated zinc finger protein isoform 2 
MAZ                   0.042   MYC-associated zinc finger protein isoform 1 
GLI3                  0.040   GLI-Kruppel family member GLI3 
GLIS2                 0.038   GLIS family zinc finger 2 
ZNF496                0.036   zinc finger protein 496 
ZNF608                0.036   zinc finger protein 608 
ZNF609                0.034   zinc finger protein 609 
ZNF625                0.034   zinc finger protein 625 
GLI1                  0.034   GLI family zinc finger 1 isoform 2 
GLI1                  0.034   GLI family zinc finger 1 isoform 1 
ZIC5                  0.034   zinc finger protein of the cerebellum 5 
ZNF384                0.032   nuclear matrix transcription factor 4 isoform c [Hom...
ZNF384                0.032   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.032   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.032   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.032   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.032   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.032   nuclear matrix transcription factor 4 isoform d [Ho...
VEZF1                 0.032   zinc finger protein 161 
ZNF362                0.032   zinc finger protein 362 
ZIC1                  0.032   zinc finger protein of the cerebellum 1 
ZNF782                0.032   zinc finger protein 782 
ZIC3                  0.032   zinc finger protein of the cerebellum 3 
BNC1                  0.032   basonuclin 1 
GLI2                  0.032   GLI-Kruppel family member GLI2 
GLIS1                 0.032   GLIS family zinc finger 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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