Guide to the Human Genome
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Name: LOC100128695 Sequence: fasta or formatted (107aa) NCBI GI: 169167525
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {107aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4          9           1
 C cysteine            0.9          1           1
 D aspartate           4.7          5           1
 E glutamate           1.9          2           1
 F phenylalanine       0.9          1           1
 G glycine             3.7          4           1
 H histidine           5.6          6           1
 I isoleucine          0.9          1           1
 K lysine              0.9          1           1
 L leucine            10.3         11           2
 M methionine          1.9          2           1
 N asparagine          2.8          3           1
 P proline            18.7         20           4
 Q glutamine           1.9          2           1
 R arginine            9.3         10           2
 S serine             17.8         19           2
 T threonine           4.7          5           1
 V valine              4.7          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128695          1.000   PREDICTED: hypothetical protein 
C19orf54              0.071   hypothetical protein LOC284325 
PRAM1                 0.061   PML-RARA regulated adaptor molecule 1 
ATXN2L                0.061   ataxin 2 related protein isoform B 
ATXN2L                0.061   ataxin 2 related protein isoform E 
ATXN2L                0.061   ataxin 2 related protein isoform C 
ATXN2L                0.061   ataxin 2 related protein isoform A 
ATXN2L                0.061   ataxin 2 related protein isoform D 
RANBP9                0.061   RAN binding protein 9 
LOC100292348          0.061   PREDICTED: hypothetical protein 
LOC100288054          0.061   PREDICTED: hypothetical protein XP_002343137 
RNF19B                0.056   ring finger protein 19B isoform a 
TACC2                 0.056   transforming, acidic coiled-coil containing protein ...
RNF19B                0.056   ring finger protein 19B isoform b 
TBKBP1                0.056   TBK1 binding protein 1 
USP31                 0.051   ubiquitin specific peptidase 31 
KIAA1715              0.051   Lunapark 
ZIC5                  0.051   zinc finger protein of the cerebellum 5 
RGP1                  0.051   RGP1 retrograde golgi transport homolog 
FLJ22184              0.051   PREDICTED: hypothetical protein LOC80164 
BRD4                  0.051   bromodomain-containing protein 4 isoform long 
MBD6                  0.046   methyl-CpG binding domain protein 6 
MYPOP                 0.046   Myb protein P42POP 
CENPV                 0.046   proline rich 6 
FLJ37078              0.046   hypothetical protein LOC222183 
GGN                   0.046   gametogenetin 
KDM6B                 0.041   lysine (K)-specific demethylase 6B 
KDM4B                 0.041   jumonji domain containing 2B 
WASF1                 0.041   Wiskott-Aldrich syndrome protein family member 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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