Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HSPA5 Sequence: fasta or formatted (654aa) NCBI GI: 16507237
Description:

heat shock 70kDa protein 5

Referenced in:

Heat-Shock Proteins and Chaperonins
ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         46           3
 C cysteine            0.3          2           1
 D aspartate           7.2         47           1
 E glutamate           9.8         64           3
 F phenylalanine       3.5         23           2
 G glycine             7.6         50           3
 H histidine           0.9          6           1
 I isoleucine          6.4         42           2
 K lysine              9.3         61           3
 L leucine             8.0         52           4
 M methionine          1.7         11           1
 N asparagine          4.3         28           1
 P proline             4.1         27           3
 Q glutamine           3.7         24           2
 R arginine            4.3         28           2
 S serine              4.3         28           2
 T threonine           7.5         49           2
 V valine              7.8         51           2
 W tryptophan          0.3          2           1
 Y tyrosine            2.0         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heat shock 70kDa protein 5 
HSPA8                 0.619   heat shock 70kDa protein 8 isoform 1 
HSPA1B                0.605   heat shock 70kDa protein 1B 
HSPA1A                0.605   heat shock 70kDa protein 1A 
HSPA2                 0.605   heat shock 70kDa protein 2 
HSPA1L                0.602   heat shock 70kDa protein 1-like 
HSPA6                 0.589   heat shock 70kDa protein 6 (HSP70B') 
HSPA8                 0.483   heat shock 70kDa protein 8 isoform 2 
HSPA9                 0.456   heat shock 70kDa protein 9 precursor 
HSPA14                0.224   heat shock 70kDa protein 14 isoform 1 
HSPA4                 0.206   heat shock 70kDa protein 4 
HSPA13                0.205   heat shock protein 70kDa family member 13 precursor ...
HSPH1                 0.189   heat shock 105kD 
HSPA4L                0.181   heat shock 70kDa protein 4-like 
HYOU1                 0.145   hypoxia up-regulated 1 precursor 
HYOU1                 0.145   hypoxia up-regulated 1 precursor 
ANKRD45               0.028   ankyrin repeat domain 45 
LOC645202             0.015   PREDICTED: hypothetical protein LOC645202 
CHAF1A                0.014   chromatin assembly factor 1, subunit A (p150) 
LOC283767             0.012   golgi autoantigen, golgin subfamily a-like 
SKI                   0.012   v-ski sarcoma viral oncogene homolog 
SMC1A                 0.011   structural maintenance of chromosomes 1A 
MYH11                 0.011   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.011   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.011   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.011   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MPHOSPH8              0.010   M-phase phosphoprotein 8 
CALD1                 0.010   caldesmon 1 isoform 1 
MYH7                  0.010   myosin, heavy chain 7, cardiac muscle, beta 
CTAGE5                0.010   CTAGE family, member 5 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press