Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HSPA13 Sequence: fasta or formatted (471aa) NCBI GI: 48928056
Description:

heat shock protein 70kDa family member 13 precursor

Referenced in:

Heat-Shock Proteins and Chaperonins
Proteasome

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         29           3
 C cysteine            0.2          1           1
 D aspartate           5.1         24           2
 E glutamate           7.0         33           2
 F phenylalanine       4.0         19           2
 G glycine             7.9         37           3
 H histidine           1.9          9           1
 I isoleucine          5.9         28           1
 K lysine              6.2         29           2
 L leucine            11.5         54           3
 M methionine          2.1         10           1
 N asparagine          4.7         22           2
 P proline             4.5         21           1
 Q glutamine           4.9         23           2
 R arginine            3.8         18           1
 S serine              6.6         31           2
 T threonine           5.7         27           2
 V valine              8.7         41           2
 W tryptophan          0.2          1           1
 Y tyrosine            3.0         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heat shock protein 70kDa family member 13 precursor ... 
HSPA5                 0.288   heat shock 70kDa protein 5 
HSPA1L                0.283   heat shock 70kDa protein 1-like 
HSPA6                 0.283   heat shock 70kDa protein 6 (HSP70B') 
HSPA1B                0.282   heat shock 70kDa protein 1B 
HSPA1A                0.282   heat shock 70kDa protein 1A 
HSPA8                 0.280   heat shock 70kDa protein 8 isoform 2 
HSPA8                 0.280   heat shock 70kDa protein 8 isoform 1 
HSPA2                 0.280   heat shock 70kDa protein 2 
HSPA9                 0.244   heat shock 70kDa protein 9 precursor 
HSPA14                0.162   heat shock 70kDa protein 14 isoform 1 
HSPA4                 0.154   heat shock 70kDa protein 4 
HSPH1                 0.153   heat shock 105kD 
HSPA4L                0.138   heat shock 70kDa protein 4-like 
HYOU1                 0.125   hypoxia up-regulated 1 precursor 
HYOU1                 0.125   hypoxia up-regulated 1 precursor 
CENPF                 0.011   centromere protein F 
CEP250                0.009   centrosomal protein 2 
MYO1H                 0.008   myosin 1H 
GRASP                 0.008   GRP1 (general receptor for phosphoinositides 1)-asso...
TRIP11                0.008   thyroid hormone receptor interactor 11 
SULT1A4               0.007   aryl sulfotransferase 
SULT1A4               0.007   aryl sulfotransferase 
SULT1A3               0.007   sulfotransferase family, cytosolic, 1A, phenol-prefe...
SULT1A3               0.007   sulfotransferase family, cytosolic, 1A, phenol-prefe...
SULT1A2               0.007   sulfotransferase family, cytosolic, 1A, phenol-prefe...
SULT1A2               0.007   sulfotransferase family, cytosolic, 1A, phenol-prefer...
SULT1A1               0.006   sulfotransferase family, cytosolic, 1A, phenol-prefe...
SULT1A1               0.006   sulfotransferase family, cytosolic, 1A, phenol-prefe...
SULT1A1               0.006   sulfotransferase family, cytosolic, 1A, phenol-prefe...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press