Guide to the Human Genome
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Name: PANX2 Sequence: fasta or formatted (677aa) NCBI GI: 163659920
Description:

pannexin 2 isoform 1

Referenced in:

Gap Junctions and Tight Junctions

Other entries for this name:
alt prot [643aa] pannexin 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         78           2
 C cysteine            1.5         10           1
 D aspartate           4.6         31           2
 E glutamate           6.4         43           3
 F phenylalanine       3.7         25           1
 G glycine             5.5         37           4
 H histidine           2.7         18           2
 I isoleucine          5.6         38           2
 K lysine              5.6         38           2
 L leucine            12.1         82           3
 M methionine          1.2          8           1
 N asparagine          3.4         23           1
 P proline             9.5         64           3
 Q glutamine           3.4         23           2
 R arginine            5.8         39           2
 S serine              4.7         32           1
 T threonine           4.7         32           1
 V valine              5.0         34           2
 W tryptophan          0.7          5           1
 Y tyrosine            2.5         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pannexin 2 isoform 1 
PANX2                 0.933   pannexin 2 isoform 2 
PANX3                 0.089   pannexin 3 
PANX1                 0.076   pannexin 1 
TAF4                  0.022   TBP-associated factor 4 
PTPN23                0.021   protein tyrosine phosphatase, non-receptor type 23 [...
PCLO                  0.020   piccolo isoform 2 
PCLO                  0.020   piccolo isoform 1 
WIPF3                 0.018   WAS/WASL interacting protein family, member 3 [Homo...
REPS2                 0.017   RALBP1 associated Eps domain containing 2 isoform 2...
REPS2                 0.017   RALBP1 associated Eps domain containing 2 isoform 1...
CSTF2T                0.016   cleavage stimulation factor, 3' pre-RNA, subunit 2, ...
CASKIN1               0.016   CASK interacting protein 1 
NHSL1                 0.015   NHS-like 1 
RICH2                 0.015   Rho GTPase-activating protein RICH2 
OTOG                  0.015   PREDICTED: otogelin isoform 2 
OTOG                  0.015   PREDICTED: otogelin isoform 1 
SF3A2                 0.014   splicing factor 3a, subunit 2 
MYPOP                 0.014   Myb protein P42POP 
OTOG                  0.014   PREDICTED: otogelin isoform 1 
OTOG                  0.014   PREDICTED: otogelin isoform 2 
OTOG                  0.014   PREDICTED: otogelin isoform 2 
OTOG                  0.014   PREDICTED: otogelin isoform 1 
UNCX                  0.013   UNC homeobox 
KIAA1522              0.013   hypothetical protein LOC57648 
NACA                  0.013   nascent polypeptide-associated complex alpha subuni...
SRRM1                 0.013   serine/arginine repetitive matrix 1 
SELV                  0.013   selenoprotein V 
HCN2                  0.013   hyperpolarization activated cyclic nucleotide-gated...
RANBP9                0.013   RAN binding protein 9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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