Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: AHNAK2 Sequence: fasta or formatted (5795aa) NCBI GI: 156766050
Description:

AHNAK nucleoprotein 2

Referenced in:

Protein Composition and Structure
Cytoskeleton

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5        436           3
 C cysteine            0.3         20           1
 D aspartate           8.2        476           2
 E glutamate           7.2        420           3
 F phenylalanine       2.6        149           2
 G glycine             8.0        466           3
 H histidine           1.3         73           1
 I isoleucine          2.1        120           1
 K lysine             10.3        598           2
 L leucine             9.1        527           2
 M methionine          3.4        195           1
 N asparagine          0.4         22           1
 P proline             9.9        572           2
 Q glutamine           4.5        258           2
 R arginine            2.4        141           3
 S serine              9.4        543           3
 T threonine           3.8        223           2
 V valine              9.0        524           2
 W tryptophan          0.3         19           2
 Y tyrosine            0.2         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   AHNAK nucleoprotein 2 
AHNAK                 0.157   AHNAK nucleoprotein isoform 1 
PRX                   0.017   periaxin isoform 2 
PRX                   0.007   periaxin isoform 1 
RP1L1                 0.005   retinitis pigmentosa 1-like 1 
TTN                   0.004   titin isoform N2-A 
RPGR                  0.004   retinitis pigmentosa GTPase regulator isoform C [Hom...
MUC17                 0.003   mucin 17 
TJP1                  0.002   tight junction protein 1 isoform b 
TJP1                  0.002   tight junction protein 1 isoform a 
NACAD                 0.002   NAC alpha domain containing 
NACAD                 0.002   PREDICTED: NAC alpha domain containing 
NEFH                  0.002   neurofilament, heavy polypeptide 200kDa 
LOC100133599          0.002   PREDICTED: hypothetical protein 
LMOD1                 0.002   leiomodin 1 (smooth muscle) 
TXNDC2                0.002   thioredoxin domain-containing 2 isoform 1 
TXNDC2                0.002   thioredoxin domain-containing 2 isoform 2 
TXNDC2                0.002   thioredoxin domain-containing 2 isoform 1 
AHNAK                 0.002   AHNAK nucleoprotein isoform 2 
NACAD                 0.002   PREDICTED: NAC alpha domain containing 
NACAD                 0.002   PREDICTED: NAC alpha domain containing 
FLJ22184              0.002   PREDICTED: hypothetical protein FLJ22184 
LOC100288496          0.002   PREDICTED: hypothetical protein XP_002342747 
NACA                  0.002   nascent polypeptide-associated complex alpha subuni...
LOC100293596          0.002   PREDICTED: similar to mucin 
ARMCX2                0.002   ALEX2 protein 
ARMCX2                0.002   ALEX2 protein 
TCHH                  0.002   trichohyalin 
CIC                   0.002   capicua homolog 
DCTN1                 0.002   dynactin 1 isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press