APOB 160

Name: APOB	Sequence: fasta or formatted (4563aa)		NCBI GI: 105990532
Description: apolipoprotein B precursor		Referenced in: Lipoproteins RNA Editing and Other RNA Modifications RNA Metabolism
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.0 276 3 C cysteine 0.5 25 1 D aspartate 5.1 234 3 E glutamate 6.5 297 3 F phenylalanine 4.9 224 2 G glycine 4.5 207 2 H histidine 2.5 114 2 I isoleucine 6.3 286 3 K lysine 7.8 356 3 L leucine 11.7 536 6 M methionine 1.7 79 2 N asparagine 5.4 245 3 P proline 3.7 171 2 Q glutamine 5.1 231 2 R arginine 3.3 150 2 S serine 8.6 393 5 T threonine 6.6 299 3 V valine 5.5 251 2 W tryptophan 0.8 37 2 Y tyrosine 3.3 152 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 apolipoprotein B precursor PRX 0.004 periaxin isoform 2 CENPF 0.002 centromere protein F AKAP9 0.002 A-kinase anchor protein 9 isoform 3 UACA 0.002 uveal autoantigen with coiled-coil domains and ankyr... UACA 0.002 uveal autoantigen with coiled-coil domains and ankyr... MYH11 0.002 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... MYH11 0.002 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... MYH11 0.002 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... MYH11 0.002 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... DST 0.002 dystonin isoform 4 DST 0.002 dystonin isoform 3 DST 0.002 dystonin isoform 2 DST 0.002 dystonin isoform 1 DST 0.002 dystonin isoform 1eA precursor AKAP9 0.002 A-kinase anchor protein 9 isoform 2 KTN1 0.002 kinectin 1 isoform c MYH9 0.002 myosin, heavy polypeptide 9, non-muscle MYH6 0.002 myosin heavy chain 6 CDK5RAP2 0.002 CDK5 regulatory subunit associated protein 2 isoform... CDK5RAP2 0.002 CDK5 regulatory subunit associated protein 2 isoform... MYH8 0.002 myosin, heavy chain 8, skeletal muscle, perinatal [... RAI14 0.002 retinoic acid induced 14 isoform d RAI14 0.002 retinoic acid induced 14 isoform c RAI14 0.002 retinoic acid induced 14 isoform b RAI14 0.002 retinoic acid induced 14 isoform a RAI14 0.002 retinoic acid induced 14 isoform a RAI14 0.002 retinoic acid induced 14 isoform a ERC2 0.002 cytomatrix protein p110 DMD 0.002 dystrophin Dp427c isoform Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.