Search of human proteins with 15451786

Search of human proteins with 15451786

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15451786 platelet-derived growth factor beta isoform 2
preproprotein [Homo sapiens]
         (226 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|15451786 platelet-derived growth factor beta isoform 2 prepro...   460   e-130
gi|4505681 platelet-derived growth factor beta isoform 1 preprop...   449   e-126
gi|15208656 platelet-derived growth factor alpha isoform 2 prepr...   139   3e-33
gi|77695917 platelet-derived growth factor alpha isoform 1 prepr...   139   3e-33
gi|4507887 vascular endothelial growth factor B [Homo sapiens]         52   3e-07
gi|4758378 vascular endothelial growth factor D preproprotein [H...    51   7e-07
gi|4885653 vascular endothelial growth factor C preproprotein [H...    51   9e-07
gi|20149543 placental growth factor, vascular endothelial growth...    46   2e-05
gi|76781482 vascular endothelial growth factor A isoform c precu...    43   2e-04
gi|76781481 vascular endothelial growth factor A isoform b precu...    43   2e-04
gi|76781480 vascular endothelial growth factor A isoform a precu...    43   2e-04
gi|76781484 vascular endothelial growth factor A isoform e precu...    42   3e-04
gi|76781483 vascular endothelial growth factor A isoform d precu...    42   3e-04
gi|76781487 vascular endothelial growth factor A isoform g precu...    42   3e-04
gi|76781485 vascular endothelial growth factor A isoform f precu...    42   4e-04
gi|9994187 platelet-derived growth factor C precursor [Homo sapi...    39   0.004
gi|13376808 platelet derived growth factor D isoform 1 precursor...    30   1.3  
gi|15451921 platelet derived growth factor D isoform 2 precursor...    30   1.3  
gi|219803946 within bgcn homolog isoform 2 [Homo sapiens]              29   3.7  
gi|14150139 within bgcn homolog isoform 1 [Homo sapiens]               29   3.7  
gi|214010175 CLIP-associating protein 1 isoform 3 [Homo sapiens]       28   4.9  
gi|214010173 CLIP-associating protein 1 isoform 2 [Homo sapiens]       28   4.9  
gi|31563537 CLIP-associating protein 1 isoform 1 [Homo sapiens]        28   4.9  
gi|207452735 epiplakin 1 [Homo sapiens]                                28   6.4  
gi|157364939 phosphodiesterase 6C [Homo sapiens]                       28   8.3  
gi|58530863 melanoma antigen family A, 10 [Homo sapiens]               28   8.3  
gi|10567820 melanoma antigen family A, 10 [Homo sapiens]               28   8.3  
gi|4506501 regulatory factor X-associated protein [Homo sapiens]       28   8.3  
gi|211059433 coiled-coil domain containing 79 [Homo sapiens]           28   8.3  

>gi|15451786 platelet-derived growth factor beta isoform 2
           preproprotein [Homo sapiens]
          Length = 226

 Score =  460 bits (1184), Expect = e-130
 Identities = 226/226 (100%), Positives = 226/226 (100%)

Query: 1   MFIMGLGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGELES 60
           MFIMGLGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGELES
Sbjct: 1   MFIMGLGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGELES 60

Query: 61  LARGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCN 120
           LARGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCN
Sbjct: 61  LARGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCN 120

Query: 121 NRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRSPGG 180
           NRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRSPGG
Sbjct: 121 NRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRSPGG 180

Query: 181 SQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLGA 226
           SQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLGA
Sbjct: 181 SQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLGA 226


>gi|4505681 platelet-derived growth factor beta isoform 1
           preproprotein [Homo sapiens]
          Length = 241

 Score =  449 bits (1154), Expect = e-126
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 7   GDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGELESLARGRR 66
           GDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGELESLARGRR
Sbjct: 22  GDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGELESLARGRR 81

Query: 67  SLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQC 126
           SLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQC
Sbjct: 82  SLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQC 141

Query: 127 RPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRSPGGSQEQRA 186
           RPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRSPGGSQEQRA
Sbjct: 142 RPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRSPGGSQEQRA 201

Query: 187 KTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLGA 226
           KTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLGA
Sbjct: 202 KTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLGA 241


>gi|15208656 platelet-derived growth factor alpha isoform 2
           preproprotein [Homo sapiens]
          Length = 196

 Score =  139 bits (349), Expect = 3e-33
 Identities = 75/165 (45%), Positives = 100/165 (60%), Gaps = 11/165 (6%)

Query: 10  IPEELYEMLSDHSIRSFDDLQRLLHGDP-GEEDGAELDLNMTRSHSGGELESLA----RG 64
           IP E+ E L+   I S  DLQRLL  D  G ED  +  L     H+   +        R 
Sbjct: 25  IPREVIERLARSQIHSIRDLQRLLEIDSVGSEDSLDTSLRAHGVHATKHVPEKRPLPIRR 84

Query: 65  RRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNV 124
           +RS+      E A+ A CKTRT ++EI R  +D T+ANFL+WPPCVEV+RC+GCCN  +V
Sbjct: 85  KRSI------EEAVPAVCKTRTVIYEIPRSQVDPTSANFLIWPPCVEVKRCTGCCNTSSV 138

Query: 125 QCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVA 169
           +C+P++V  R V+V K+E VRKKP  K+  V LE+HL C C T +
Sbjct: 139 KCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEHLECACATTS 183


>gi|77695917 platelet-derived growth factor alpha isoform 1
           preproprotein [Homo sapiens]
          Length = 211

 Score =  139 bits (349), Expect = 3e-33
 Identities = 75/165 (45%), Positives = 100/165 (60%), Gaps = 11/165 (6%)

Query: 10  IPEELYEMLSDHSIRSFDDLQRLLHGDP-GEEDGAELDLNMTRSHSGGELESLA----RG 64
           IP E+ E L+   I S  DLQRLL  D  G ED  +  L     H+   +        R 
Sbjct: 25  IPREVIERLARSQIHSIRDLQRLLEIDSVGSEDSLDTSLRAHGVHATKHVPEKRPLPIRR 84

Query: 65  RRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNV 124
           +RS+      E A+ A CKTRT ++EI R  +D T+ANFL+WPPCVEV+RC+GCCN  +V
Sbjct: 85  KRSI------EEAVPAVCKTRTVIYEIPRSQVDPTSANFLIWPPCVEVKRCTGCCNTSSV 138

Query: 125 QCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVA 169
           +C+P++V  R V+V K+E VRKKP  K+  V LE+HL C C T +
Sbjct: 139 KCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEHLECACATTS 183


>gi|4507887 vascular endothelial growth factor B [Homo sapiens]
          Length = 207

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 13/119 (10%)

Query: 80  AECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVR 139
           A C+ R  V  ++  L+  T A  LV P CV VQRC GCC +  ++C PT       QVR
Sbjct: 45  ATCQPREVVVPLTVELMG-TVAKQLV-PSCVTVQRCGGCCPDDGLECVPTGQH----QVR 98

Query: 140 KIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTV 198
              ++ + P  +   ++LE+H  C+C      RP  +     +  RA TP  R   R+V
Sbjct: 99  MQILMIRYPSSQLGEMSLEEHSQCEC------RP-KKKDSAVKPDRAATPHHRPQPRSV 150


>gi|4758378 vascular endothelial growth factor D preproprotein [Homo
           sapiens]
          Length = 354

 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 3/93 (3%)

Query: 81  ECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRK 140
           +C  R    E++  L   TN  F   PPCV V RC GCCN  ++ C  T       Q+ +
Sbjct: 110 QCSPRETCVEVASELGKSTNTFFK--PPCVNVFRCGGCCNEESLICMNTSTSYISKQLFE 167

Query: 141 IEIVRKKPIFKKATVTLEDHLACKCETVAAARP 173
           I  V    + +   V + +H  CKC   A   P
Sbjct: 168 IS-VPLTSVPELVPVKVANHTGCKCLPTAPRHP 199


>gi|4885653 vascular endothelial growth factor C preproprotein [Homo
           sapiens]
          Length = 419

 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 81  ECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRK 140
           +C  R    ++ +     TN  F   PPCV V RC GCCN+  +QC  T        + +
Sbjct: 130 QCMPREVCIDVGKEFGVATNTFFK--PPCVSVYRCGGCCNSEGLQCMNTSTSYLSKTLFE 187

Query: 141 IEI-VRKKPIFKKATVTLEDHLACKC 165
           I + + + P  K  T++  +H +C+C
Sbjct: 188 ITVPLSQGP--KPVTISFANHTSCRC 211


>gi|20149543 placental growth factor, vascular endothelial growth
           factor-related protein [Homo sapiens]
          Length = 170

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 107 PPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCE 166
           P CV + RC+GCC + N+ C P +     +Q+ KI     +P +    +T   H+ C+C 
Sbjct: 75  PSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIR-SGDRPSY--VELTFSQHVRCECR 131

Query: 167 TV-AAARPVTRSPGGSQEQR 185
            +    +P  R P G  ++R
Sbjct: 132 PLREKMKPERRRPKGRGKRR 151


>gi|76781482 vascular endothelial growth factor A isoform c
           precursor [Homo sapiens]
          Length = 389

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 103 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 162
           ++  P CV + RC GCCN+  ++C PT+     +Q+ +I+  + + I     ++   H  
Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307

Query: 163 CKC----ETVAAARPVTRSPGGSQEQRAK 187
           C+C    +     +   R  G  Q+++ K
Sbjct: 308 CECRPKKDRARQEKKSVRGKGKGQKRKRK 336


>gi|76781481 vascular endothelial growth factor A isoform b
           precursor [Homo sapiens]
          Length = 395

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 103 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 162
           ++  P CV + RC GCCN+  ++C PT+     +Q+ +I+  + + I     ++   H  
Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307

Query: 163 CKC----ETVAAARPVTRSPGGSQEQRAK 187
           C+C    +     +   R  G  Q+++ K
Sbjct: 308 CECRPKKDRARQEKKSVRGKGKGQKRKRK 336


>gi|76781480 vascular endothelial growth factor A isoform a
           precursor [Homo sapiens]
          Length = 412

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 103 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 162
           ++  P CV + RC GCCN+  ++C PT+     +Q+ +I+  + + I     ++   H  
Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307

Query: 163 CKC----ETVAAARPVTRSPGGSQEQRAK 187
           C+C    +     +   R  G  Q+++ K
Sbjct: 308 CECRPKKDRARQEKKSVRGKGKGQKRKRK 336


>gi|76781484 vascular endothelial growth factor A isoform e
           precursor [Homo sapiens]
          Length = 354

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 103 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 162
           ++  P CV + RC GCCN+  ++C PT+     +Q+ +I+  + + I     ++   H  
Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307

Query: 163 CKCETVAAARPVTRSPGGSQEQRAK 187
           C+C      R    +P G   +R K
Sbjct: 308 CECRP-KKDRARQENPCGPCSERRK 331


>gi|76781483 vascular endothelial growth factor A isoform d
           precursor [Homo sapiens]
          Length = 371

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 103 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 162
           ++  P CV + RC GCCN+  ++C PT+     +Q+ +I+  + + I     ++   H  
Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307

Query: 163 CKCETVAAARPVTRSPGGSQEQRAK 187
           C+C      R    +P G   +R K
Sbjct: 308 CECRP-KKDRARQENPCGPCSERRK 331


>gi|76781487 vascular endothelial growth factor A isoform g
           precursor [Homo sapiens]
          Length = 371

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 103 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 162
           ++  P CV + RC GCCN+  ++C PT+     +Q+ +I+  + + I     ++   H  
Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307

Query: 163 CKCETVAAARPVTRSPGGSQEQRAK 187
           C+C      R    +P G   +R K
Sbjct: 308 CECRP-KKDRARQENPCGPCSERRK 331


>gi|76781485 vascular endothelial growth factor A isoform f
           precursor [Homo sapiens]
          Length = 327

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 103 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 162
           ++  P CV + RC GCCN+  ++C PT+     +Q+ +I+  + + I     ++   H  
Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307

Query: 163 CKC 165
           C+C
Sbjct: 308 CEC 310


>gi|9994187 platelet-derived growth factor C precursor [Homo
           sapiens]
          Length = 345

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 13/164 (7%)

Query: 11  PEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAEL-DLNMTRSHSGGELESLARGRRSLG 69
           P  L   L +++I +F  L+ L+     E    +L DL        G+     R  R + 
Sbjct: 178 PSALPLDLLNNAITAFSTLEDLIRYLEPERWQLDLEDLYRPTWQLLGKAFVFGRKSRVVD 237

Query: 70  SLTIAEPAMIAECKTRTEVFEIS-RRLIDRTNANFLVWPPCVEVQRCSG---CC--NNRN 123
              + E   +  C  R   F +S R  + RT+  F  WP C+ V+RC G   CC  N   
Sbjct: 238 LNLLTEEVRLYSCTPRN--FSVSIREELKRTDTIF--WPGCLLVKRCGGNCACCLHNCNE 293

Query: 124 VQCRPTQVQLRPVQVRKIE-IVRKKPIFKKAT-VTLEDHLACKC 165
            QC P++V  +  +V ++      + + K  T V LE H  C C
Sbjct: 294 CQCVPSKVTKKYHEVLQLRPKTGVRGLHKSLTDVALEHHEECDC 337


>gi|13376808 platelet derived growth factor D isoform 1 precursor
           [Homo sapiens]
          Length = 370

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 12/83 (14%)

Query: 101 ANFLVWPPCVEVQRCSGCC-----NNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATV 155
           AN + +P C+ VQRC G C     N R+  C   +   +  +V + E    K   +  T+
Sbjct: 288 ANVVFFPRCLLVQRCGGNCGCGTVNWRSCTCNSGKTVKKYHEVLQFEPGHIKRRGRAKTM 347

Query: 156 TLED-----HLACKCETVAAARP 173
            L D     H  C C  + ++RP
Sbjct: 348 ALVDIQLDHHERCDC--ICSSRP 368


>gi|15451921 platelet derived growth factor D isoform 2 precursor
           [Homo sapiens]
          Length = 364

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 12/83 (14%)

Query: 101 ANFLVWPPCVEVQRCSGCC-----NNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATV 155
           AN + +P C+ VQRC G C     N R+  C   +   +  +V + E    K   +  T+
Sbjct: 282 ANVVFFPRCLLVQRCGGNCGCGTVNWRSCTCNSGKTVKKYHEVLQFEPGHIKRRGRAKTM 341

Query: 156 TLED-----HLACKCETVAAARP 173
            L D     H  C C  + ++RP
Sbjct: 342 ALVDIQLDHHERCDC--ICSSRP 362


>gi|219803946 within bgcn homolog isoform 2 [Homo sapiens]
          Length = 203

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 170 AARPVTRS-PGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKET 223
           A  PVT S P G +   +KT +  +  +  R ++  KG+      T DK +L+ET
Sbjct: 66  ATAPVTPSRPEGGEPGLSKTAKRNLKRKEKRRQQQEKGEAEALSRTLDKVSLEET 120


>gi|14150139 within bgcn homolog isoform 1 [Homo sapiens]
          Length = 204

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 170 AARPVTRS-PGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKET 223
           A  PVT S P G +   +KT +  +  +  R ++  KG+      T DK +L+ET
Sbjct: 67  ATAPVTPSRPEGGEPGLSKTAKRNLKRKEKRRQQQEKGEAEALSRTLDKVSLEET 121


>gi|214010175 CLIP-associating protein 1 isoform 3 [Homo sapiens]
          Length = 1471

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 14/75 (18%)

Query: 164  KCETVA----AARPVTRSPGGSQEQRAKTPQTRVT--IRTVRVRRPPKGKHRKFK----- 212
            +C+ V+    AA P T   GGS+ +  +T     T  + T   R  P  + R +      
Sbjct: 1144 ECDIVSRDGGAASPATEGRGGSEVEGGRTALDNKTSLLNTQPPRAFPGPRARDYNPYPYS 1203

Query: 213  ---HTHDKTALKETL 224
               +T+DKTALKE +
Sbjct: 1204 DAINTYDKTALKEAV 1218


>gi|214010173 CLIP-associating protein 1 isoform 2 [Homo sapiens]
          Length = 1479

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 14/75 (18%)

Query: 164  KCETVA----AARPVTRSPGGSQEQRAKTPQTRVT--IRTVRVRRPPKGKHRKFK----- 212
            +C+ V+    AA P T   GGS+ +  +T     T  + T   R  P  + R +      
Sbjct: 1152 ECDIVSRDGGAASPATEGRGGSEVEGGRTALDNKTSLLNTQPPRAFPGPRARDYNPYPYS 1211

Query: 213  ---HTHDKTALKETL 224
               +T+DKTALKE +
Sbjct: 1212 DAINTYDKTALKEAV 1226


>gi|31563537 CLIP-associating protein 1 isoform 1 [Homo sapiens]
          Length = 1538

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 14/75 (18%)

Query: 164  KCETVA----AARPVTRSPGGSQEQRAKTPQTRVT--IRTVRVRRPPKGKHRKFK----- 212
            +C+ V+    AA P T   GGS+ +  +T     T  + T   R  P  + R +      
Sbjct: 1211 ECDIVSRDGGAASPATEGRGGSEVEGGRTALDNKTSLLNTQPPRAFPGPRARDYNPYPYS 1270

Query: 213  ---HTHDKTALKETL 224
               +T+DKTALKE +
Sbjct: 1271 DAINTYDKTALKEAV 1285


>gi|207452735 epiplakin 1 [Homo sapiens]
          Length = 5090

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 11/80 (13%)

Query: 9    PIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAEL-----DLNMTRSHSGGELESLAR 63
            P+PE      S  ++ + + +QR L   PG +DG  L       + T     G LE +  
Sbjct: 1114 PLPE------SAPALPTEEQVQRSLQAVPGAKDGTSLWDLLSSCHFTEEQRRGLLEDVQE 1167

Query: 64   GRRSLGSLTIAEPAMIAECK 83
            GR ++  L  +    + E K
Sbjct: 1168 GRTTVPQLLASVQRWVQETK 1187


>gi|157364939 phosphodiesterase 6C [Homo sapiens]
          Length = 858

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 22  SIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGELES-LARGRRSLGSLTIAEPAMIA 80
           S  SF +L ++      EE    L+L  T    GG  E  + R  + L  L  A+   + 
Sbjct: 46  SSMSFSELTQV------EESALCLELLWTVQEEGGTPEQGVHRALQRLAHLLQADRCSMF 99

Query: 81  ECKTRTEVFEISRRLIDRT 99
            C++R  + E++ RL+D T
Sbjct: 100 LCRSRNGIPEVASRLLDVT 118


>gi|58530863 melanoma antigen family A, 10 [Homo sapiens]
          Length = 369

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 161 LACKCETVAAARPVTRSPGGSQEQRAKTPQT 191
           +AC   +V A+ P+ +S  GS  Q+ ++P T
Sbjct: 89  IACSSPSVVASLPLDQSDEGSSSQKEESPST 119


>gi|10567820 melanoma antigen family A, 10 [Homo sapiens]
          Length = 369

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 161 LACKCETVAAARPVTRSPGGSQEQRAKTPQT 191
           +AC   +V A+ P+ +S  GS  Q+ ++P T
Sbjct: 89  IACSSPSVVASLPLDQSDEGSSSQKEESPST 119


>gi|4506501 regulatory factor X-associated protein [Homo sapiens]
          Length = 272

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 4   MGLGDPIPEELYEMLSDHSIRSFDDLQRLLH-GDP--GEEDGAEL-DLNMTRSHSGGELE 59
           +G G P+   L E   D    + +D   LL   DP  G E  A L DL    +HSGGE  
Sbjct: 65  VGAGKPV-RYLCEGAGDGEEEAGEDEADLLDTSDPPGGGESAASLEDLEDEETHSGGEGS 123

Query: 60  SLARGRRSLGSLTIAEPAMIAECKTRT 86
           S    RR  G  ++++      C   T
Sbjct: 124 SGGARRRGSGGGSMSKTCTYEGCSETT 150


>gi|211059433 coiled-coil domain containing 79 [Homo sapiens]
          Length = 727

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 86  TEVFEISRRLIDRTNANFLVWPPCVEV--QRCSGC 118
           T+ F +   +I++   +FL  P C E+   RCSGC
Sbjct: 561 TDPFTLCSDIINKEVVSFLATPSCSEMLTYRCSGC 595


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,313,380
Number of Sequences: 37866
Number of extensions: 398623
Number of successful extensions: 1101
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1075
Number of HSP's gapped (non-prelim): 34
length of query: 226
length of database: 18,247,518
effective HSP length: 99
effective length of query: 127
effective length of database: 14,498,784
effective search space: 1841345568
effective search space used: 1841345568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.