PDGFB 5615

Name: PDGFB	Sequence: fasta or formatted (226aa)		NCBI GI: 15451786
Description: platelet-derived growth factor beta isoform 2 preproprotein		Referenced in: Retroviral Oncogene Homologs Platelets and Megakaryocytes
Other entries for this name: alt prot [241aa] platelet-derived growth factor beta isoform 1 preproprotein
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.2 14 3 C cysteine 3.5 8 2 D aspartate 4.4 10 2 E glutamate 8.0 18 2 F phenylalanine 2.7 6 1 G glycine 6.2 14 2 H histidine 3.1 7 1 I isoleucine 4.9 11 1 K lysine 6.2 14 2 L leucine 8.4 19 2 M methionine 2.2 5 1 N asparagine 2.7 6 2 P proline 6.2 14 2 Q glutamine 4.0 9 1 R arginine 11.1 25 2 S serine 5.3 12 1 T threonine 7.5 17 1 V valine 6.6 15 1 W tryptophan 0.4 1 1 Y tyrosine 0.4 1 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 platelet-derived growth factor beta isoform 2 prepro... PDGFB 0.975 platelet-derived growth factor beta isoform 1 preprop... PDGFA 0.262 platelet-derived growth factor alpha isoform 2 prepr... PDGFA 0.262 platelet-derived growth factor alpha isoform 1 prepr... VEGFB 0.062 vascular endothelial growth factor B FIGF 0.060 vascular endothelial growth factor D preproprotein [H... VEGFC 0.060 vascular endothelial growth factor C preproprotein [H... PGF 0.048 placental growth factor, vascular endothelial growth... VEGFA 0.041 vascular endothelial growth factor A isoform c precu... VEGFA 0.041 vascular endothelial growth factor A isoform b precu... VEGFA 0.041 vascular endothelial growth factor A isoform a precu... VEGFA 0.039 vascular endothelial growth factor A isoform e precu... VEGFA 0.039 vascular endothelial growth factor A isoform d precu... VEGFA 0.039 vascular endothelial growth factor A isoform g precu... VEGFA 0.039 vascular endothelial growth factor A isoform f precu... PDGFC 0.032 platelet-derived growth factor C precursor PDGFD 0.011 platelet derived growth factor D isoform 1 precursor... PDGFD 0.011 platelet derived growth factor D isoform 2 precursor... WIBG 0.009 within bgcn homolog isoform 2 WIBG 0.009 within bgcn homolog isoform 1 CLASP1 0.007 CLIP-associating protein 1 isoform 3 CLASP1 0.007 CLIP-associating protein 1 isoform 2 CLASP1 0.007 CLIP-associating protein 1 isoform 1 EPPK1 0.007 epiplakin 1 PDE6C 0.007 phosphodiesterase 6C MAGEA10 0.007 melanoma antigen family A, 10 MAGEA10 0.007 melanoma antigen family A, 10 RFXAP 0.007 regulatory factor X-associated protein CCDC79 0.007 coiled-coil domain containing 79 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.