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Search of human proteins with 153082696
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153082696 intercellular adhesion molecule 2 precursor [Homo
sapiens]
(275 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153082722 intercellular adhesion molecule 2 precursor [Homo s... 557 e-159
gi|153082719 intercellular adhesion molecule 2 precursor [Homo s... 557 e-159
gi|153082699 intercellular adhesion molecule 2 precursor [Homo s... 557 e-159
gi|153082686 intercellular adhesion molecule 2 precursor [Homo s... 557 e-159
gi|153082696 intercellular adhesion molecule 2 precursor [Homo s... 557 e-159
gi|167466207 intercellular adhesion molecule 3 precursor [Homo s... 119 2e-27
gi|189571583 intercellular adhesion molecule 5 precursor [Homo s... 114 9e-26
gi|167466198 intercellular adhesion molecule 1 precursor [Homo s... 102 4e-22
gi|4504561 intercellular adhesion molecule 4 isoform 1 precursor... 78 7e-15
gi|12545402 intercellular adhesion molecule 4 isoform 2 precurso... 78 1e-14
gi|85068578 intercellular adhesion molecule 4 isoform 3 precurso... 50 2e-06
gi|4507875 vascular cell adhesion molecule 1 isoform a precursor... 46 4e-05
gi|18201909 vascular cell adhesion molecule 1 isoform b precurso... 41 0.001
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 32 0.60
gi|4758822 nephrin precursor [Homo sapiens] 32 0.79
gi|221136848 neuroblastoma breakpoint family, member 6 isoform 2... 31 1.3
gi|221218991 neuroblastoma breakpoint family, member 4 [Homo sap... 31 1.3
gi|169636418 mitochondrial ribosomal protein L38 [Homo sapiens] 31 1.3
gi|110349719 titin isoform N2-A [Homo sapiens] 30 1.8
gi|148664211 immunoglobulin superfamily, member 4D isoform 2 [Ho... 30 1.8
gi|148664190 immunoglobulin superfamily, member 4D isoform 1 [Ho... 30 1.8
gi|118582255 ATP-binding cassette, sub-family C, member 8 [Homo ... 30 3.0
gi|208431795 dynactin 4 (p62) isoform c [Homo sapiens] 30 3.0
gi|208431793 dynactin 4 (p62) isoform a [Homo sapiens] 30 3.0
gi|7705893 dynactin 4 (p62) isoform b [Homo sapiens] 30 3.0
gi|221136844 neuroblastoma breakpoint family, member 6 isoform 1... 29 3.9
gi|45505167 immunoglobulin superfamily, member 1 isoform 1 [Homo... 29 5.1
gi|24308334 family with sequence similarity 120B [Homo sapiens] 29 5.1
gi|11559929 coatomer protein complex, subunit gamma 1 [Homo sapi... 28 6.7
gi|112293287 tudor domain containing 7 [Homo sapiens] 28 6.7
>gi|153082722 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 557 bits (1436), Expect = e-159
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL 60
MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL
Sbjct: 1 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL 60
Query: 61 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ 120
ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ
Sbjct: 61 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ 120
Query: 121 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD 180
PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD
Sbjct: 121 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD 180
Query: 181 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT 240
REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT
Sbjct: 181 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT 240
Query: 241 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP 275
SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP
Sbjct: 241 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP 275
>gi|153082719 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 557 bits (1436), Expect = e-159
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL 60
MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL
Sbjct: 1 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL 60
Query: 61 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ 120
ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ
Sbjct: 61 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ 120
Query: 121 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD 180
PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD
Sbjct: 121 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD 180
Query: 181 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT 240
REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT
Sbjct: 181 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT 240
Query: 241 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP 275
SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP
Sbjct: 241 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP 275
>gi|153082699 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 557 bits (1436), Expect = e-159
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL 60
MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL
Sbjct: 1 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL 60
Query: 61 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ 120
ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ
Sbjct: 61 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ 120
Query: 121 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD 180
PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD
Sbjct: 121 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD 180
Query: 181 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT 240
REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT
Sbjct: 181 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT 240
Query: 241 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP 275
SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP
Sbjct: 241 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP 275
>gi|153082686 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 557 bits (1436), Expect = e-159
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL 60
MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL
Sbjct: 1 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL 60
Query: 61 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ 120
ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ
Sbjct: 61 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ 120
Query: 121 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD 180
PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD
Sbjct: 121 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD 180
Query: 181 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT 240
REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT
Sbjct: 181 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT 240
Query: 241 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP 275
SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP
Sbjct: 241 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP 275
>gi|153082696 intercellular adhesion molecule 2 precursor [Homo
sapiens]
Length = 275
Score = 557 bits (1436), Expect = e-159
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL 60
MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL
Sbjct: 1 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL 60
Query: 61 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ 120
ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ
Sbjct: 61 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ 120
Query: 121 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD 180
PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD
Sbjct: 121 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD 180
Query: 181 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT 240
REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT
Sbjct: 181 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT 240
Query: 241 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP 275
SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP
Sbjct: 241 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP 275
>gi|167466207 intercellular adhesion molecule 3 precursor [Homo
sapiens]
Length = 547
Score = 119 bits (299), Expect = 2e-27
Identities = 77/214 (35%), Positives = 112/214 (52%), Gaps = 9/214 (4%)
Query: 16 LICC---PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQ 72
L+CC PG + F + V P+ + GSL VNCST C E LETSL K L+
Sbjct: 18 LVCCLLTPGVQGQEFLLRVEPQNPVLSAGGSLFVNCSTDCPSSEKIALETSLSKELVASG 77
Query: 73 AQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTI 132
W + +SN++ ++ + C C+G Q + +SN++VY+ P +V L P VG++FT+
Sbjct: 78 MGWAAFNLSNVTGNSRILCSVYCNGSQITGSSNITVYRLPERVELAPLPPWQPVGQNFTL 137
Query: 133 ECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLA 192
C+V P SLT+ L R E L + A P E TAT A R+D FSC
Sbjct: 138 RCQVEDGSPRTSLTVVLLRWEEELSRQ---PAVEEPAEVTATV--LASRDDHGAPFSCRT 192
Query: 193 VLDLMSRGGNIFHKHSAPKMLEIYE-PVSDSQMV 225
LD+ +G +F SAP+ L + PV+ ++V
Sbjct: 193 ELDMQPQGLGLFVNTSAPRQLRTFVLPVTPPRLV 226
Score = 28.1 bits (61), Expect = 8.7
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 111 PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE 170
PPR V P + V S+ ++C + + P ++L G++ L+
Sbjct: 222 PPRLVA----PRFLEVETSWPVDCTLDGLFPASEAQVYLALGDQMLNATVMNHGDTL--T 275
Query: 171 ATATFNSTADREDGHRNFSCLAVL 194
ATAT + AD+E G R C L
Sbjct: 276 ATATATARADQE-GAREIVCNVTL 298
>gi|189571583 intercellular adhesion molecule 5 precursor [Homo
sapiens]
Length = 924
Score = 114 bits (285), Expect = 9e-26
Identities = 73/200 (36%), Positives = 98/200 (49%), Gaps = 1/200 (0%)
Query: 24 EKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQW-KHYLVSN 82
++ F ++P+ VE GSL +NCST C +PE GGLETSL + +W LV
Sbjct: 31 QEPFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDI 90
Query: 83 ISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPL 142
+T C F C+ + + +Q P +V L P VG++FT+ CRVP P
Sbjct: 91 REPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPR 150
Query: 143 DSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGN 202
SLTL L RG + L +F P + A T A RED NFSC A LDL G
Sbjct: 151 ASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPHGLG 210
Query: 203 IFHKHSAPKMLEIYEPVSDS 222
+F SAP+ L + D+
Sbjct: 211 LFENSSAPRELRTFSLSPDA 230
Score = 36.2 bits (82), Expect = 0.032
Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 21/133 (15%)
Query: 89 LQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLF 148
L C+ T G+ NV++Y P +LTL V+ G+ T+ C
Sbjct: 300 LVCNVTLGGENRETRENVTIYSFPAP-LLTLSEPSVSEGQMVTVTCAA------------ 346
Query: 149 LFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHS 208
G + L AA Q A N+T D R+F C A LD+ G K+
Sbjct: 347 ---GAQALVTLEGVPAAVPGQPAQLQLNAT--ENDDRRSFFCDATLDV---DGETLIKNR 398
Query: 209 APKMLEIYEPVSD 221
+ ++ +Y P D
Sbjct: 399 SAELRVLYAPRLD 411
>gi|167466198 intercellular adhesion molecule 1 precursor [Homo
sapiens]
Length = 532
Score = 102 bits (254), Expect = 4e-22
Identities = 75/220 (34%), Positives = 108/220 (49%), Gaps = 13/220 (5%)
Query: 9 LTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKI- 67
L V L L PG+ + V P K+ + GS+ V CST+C+QP++ G+ET L K
Sbjct: 13 LLVLLGALFPGPGNAQ----TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKE 68
Query: 68 LLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVG 127
LL K Y +SN+ D+ C+ C Q + + ++VY P +V L P+ VG
Sbjct: 69 LLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVG 128
Query: 128 KSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGH-R 186
K+ T+ C+V P +LT+ L RG + L K PA E + R D H
Sbjct: 129 KNLTLRCQVEGGAPRANLTVVLLRGEKEL------KREPAVGEPAEVTTTVLVRRDHHGA 182
Query: 187 NFSCLAVLDLMSRGGNIFHKHSAPKMLEIYE-PVSDSQMV 225
NFSC LDL +G +F SAP L+ + P + Q+V
Sbjct: 183 NFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLV 222
Score = 34.3 bits (77), Expect = 0.12
Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 23/136 (16%)
Query: 89 LQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLF 148
L C + + V++Y P ++ +P V+ G T++C P +TL
Sbjct: 288 LTCAVILGNQSQETLQTVTIYSFPAPNVILTKPE-VSEGTEVTVKCEA---HPRAKVTL- 342
Query: 149 LFRGNETLHYETFGKAAPA-PQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKH 207
PA P A A ED R+FSC A L++ G + HK+
Sbjct: 343 --------------NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEV---AGQLIHKN 385
Query: 208 SAPKMLEIYEPVSDSQ 223
++ +Y P D +
Sbjct: 386 QTRELRVLYGPRLDER 401
>gi|4504561 intercellular adhesion molecule 4 isoform 1 precursor
[Homo sapiens]
Length = 271
Score = 78.2 bits (191), Expect = 7e-15
Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 10/230 (4%)
Query: 20 PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYL 79
P F V + P+ +AV+P S+++NCS +C QP+ L T L + W Y
Sbjct: 41 PSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ 100
Query: 80 VSNI-SHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPT 138
+ ++ + ++ C TC+GK S ++ Y+PP VI L+P V G+ +T+ C V
Sbjct: 101 LLDVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVI--LEPP-VLKGRKYTLRCHVTQ 157
Query: 139 VEPLDSLTLFLFRGNETLHYETFGKAAPAP-QEATATFNSTADREDGHRNFSCLAVLDLM 197
V P+ L + L G+ ++ E+ + T T+ A D + C A L+L
Sbjct: 158 VFPVGYLVVTLRHGSRVIYSESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNL- 216
Query: 198 SRGGNIFHKHSAPKMLEIYEPVSDSQMV--IIVTVVSVLLSLFVTSVLLC 245
G + SAP L + + + + I +V +LL++ + C
Sbjct: 217 --DGLVVRNSSAPITLMLAWSPAPTALASGSIAALVGILLTVGAAYLCKC 264
>gi|12545402 intercellular adhesion molecule 4 isoform 2 precursor
[Homo sapiens]
Length = 237
Score = 77.8 bits (190), Expect = 1e-14
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 8/200 (4%)
Query: 20 PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYL 79
P F V + P+ +AV+P S+++NCS +C QP+ L T L + W Y
Sbjct: 41 PSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ 100
Query: 80 VSNI-SHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPT 138
+ ++ + ++ C TC+GK S ++ Y+PP VI L+P V G+ +T+ C V
Sbjct: 101 LLDVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVI--LEPP-VLKGRKYTLRCHVTQ 157
Query: 139 VEPLDSLTLFLFRGNETLHYETFGKAAPAP-QEATATFNSTADREDGHRNFSCLAVLDLM 197
V P+ L + L G+ ++ E+ + T T+ A D + C A L+L
Sbjct: 158 VFPVGYLVVTLRHGSRVIYSESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNL- 216
Query: 198 SRGGNIFHKHSAPKMLEIYE 217
G + SAP L + E
Sbjct: 217 --DGLVVRNSSAPITLMLGE 234
>gi|85068578 intercellular adhesion molecule 4 isoform 3 precursor
[Homo sapiens]
Length = 272
Score = 50.4 bits (119), Expect = 2e-06
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 20 PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYL 79
P F V + P+ +AV+P S+++NCS +C QP+ L T L + W Y
Sbjct: 41 PSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ 100
Query: 80 VSNI-SHDTVLQCHFTCSGKQESMNSNVSVYQPP 112
+ ++ + ++ C TC+GK S ++ Y P
Sbjct: 101 LLDVRAWSSLAHCLVTCAGKTRWATSRITAYSVP 134
>gi|4507875 vascular cell adhesion molecule 1 isoform a precursor
[Homo sapiens]
Length = 739
Score = 45.8 bits (107), Expect = 4e-05
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 24 EKVFEVHVRP-KKLAVEPKGSLEVNCSTT-CNQPEVGGLETSLDKIL---LDEQAQWKHY 78
EK F V + P ++A + S+ + CS C P T +D L + +
Sbjct: 310 EKPFTVEISPGPRIAAQIGDSVMLTCSVMGCESPSFSW-RTQIDSPLSGKVRSEGTNSTL 368
Query: 79 LVSNISHDTVLQ--CHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRV 136
+S +S + C TC K+ V +Y PR + + LV G S T+ C+V
Sbjct: 369 TLSPVSFENEHSYLCTVTCGHKKLEKGIQVELYSFPRDPEIEMSGGLVN-GSSVTVSCKV 427
Query: 137 PTVEPLDSLTLFLFRGNETL 156
P+V PLD L + L +G L
Sbjct: 428 PSVYPLDRLEIELLKGETIL 447
Score = 41.2 bits (95), Expect = 0.001
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 12/212 (5%)
Query: 25 KVFEVHVRPKKLAVEPKG-SLEVNCSTTCNQPEVGGLETSLDKIL---LDEQAQWKHYLV 80
+ F++ P+ + G S+ + CSTT + T +D L + + +
Sbjct: 23 QAFKIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTM 82
Query: 81 SNIS--HDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPT 138
+ +S ++ C TC ++ V +Y P+ + L L A GK T++C V
Sbjct: 83 NPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEA-GKPITVKCSVAD 141
Query: 139 VEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADR--EDGHRNFSCLAVLDL 196
V P D L + L +G+ + + F + A T + T ED + C A L +
Sbjct: 142 VYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHI 201
Query: 197 MSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIV 228
++ A K L++Y +S VI V
Sbjct: 202 -DEMDSVPTVRQAVKELQVY--ISPKNTVISV 230
>gi|18201909 vascular cell adhesion molecule 1 isoform b precursor
[Homo sapiens]
Length = 647
Score = 41.2 bits (95), Expect = 0.001
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 12/212 (5%)
Query: 25 KVFEVHVRPKKLAVEPKG-SLEVNCSTTCNQPEVGGLETSLDKIL---LDEQAQWKHYLV 80
+ F++ P+ + G S+ + CSTT + T +D L + + +
Sbjct: 23 QAFKIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTM 82
Query: 81 SNIS--HDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPT 138
+ +S ++ C TC ++ V +Y P+ + L L A GK T++C V
Sbjct: 83 NPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEA-GKPITVKCSVAD 141
Query: 139 VEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADR--EDGHRNFSCLAVLDL 196
V P D L + L +G+ + + F + A T + T ED + C A L +
Sbjct: 142 VYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHI 201
Query: 197 MSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIV 228
++ A K L++Y +S VI V
Sbjct: 202 -DEMDSVPTVRQAVKELQVY--ISPKNTVISV 230
Score = 33.1 bits (74), Expect = 0.27
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 127 GKSFTIECRVPTVEPLDSLTLFLFRGNETL 156
G S T+ C+VP+V PLD L + L +G L
Sbjct: 326 GSSVTVSCKVPSVYPLDRLEIELLKGETIL 355
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 32.0 bits (71), Expect = 0.60
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 105 NVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDS 144
N+SV+ PP +L P V VGK+ T+EC V EP S
Sbjct: 3105 NLSVHGPPTVSVLPEGPVWVKVGKAVTLEC-VSAGEPRSS 3143
>gi|4758822 nephrin precursor [Homo sapiens]
Length = 1241
Score = 31.6 bits (70), Expect = 0.79
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 19/160 (11%)
Query: 90 QCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFL 149
Q FTC Q S ++ ++V PP V + + + G + + C + P + L
Sbjct: 523 QAKFTCKAGQLSASTQLAVQFPPTNVTILANASALRPGDALNLTCVSVSSNP--PVNLSW 580
Query: 150 FRGNETLHYETFGKAAP---APQEATATFNS----TADREDGHRNFSCLAVLDLMSRGGN 202
+ E L G AAP AP + +A S + R+ G R +C A + +
Sbjct: 581 DKEGERLE----GVAAPPRRAPFKGSAAARSVLLQVSSRDHGQR-VTCRAHSAELRETVS 635
Query: 203 IFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVTSV 242
F++ + +Y P + V++VT V +L SV
Sbjct: 636 SFYRLNV-----LYRPEFLGEQVLVVTAVEQGEALLPVSV 670
>gi|221136848 neuroblastoma breakpoint family, member 6 isoform 2
[Homo sapiens]
Length = 638
Score = 30.8 bits (68), Expect = 1.3
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 83 ISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPL 142
+ D++ +C TCS NSN QP R +T + V + +E P E
Sbjct: 201 VPQDSLEECAVTCSNSHNPSNSN----QPHRSTKITFKEH--EVDSALVVESEHPHDEEE 254
Query: 143 DSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADRE 182
++L + N+ H E GK AP P NS RE
Sbjct: 255 EALN--IPPENQNDHEEEEGK-APVPPRHHDKSNSYRHRE 291
>gi|221218991 neuroblastoma breakpoint family, member 4 [Homo
sapiens]
Length = 638
Score = 30.8 bits (68), Expect = 1.3
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 83 ISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPL 142
+ D++ +C TCS NSN QP R +T + V + +E P E
Sbjct: 201 VPQDSLEECAVTCSNSHNPSNSN----QPHRSTKITFKEH--EVDSALVVESEHPHDEEE 254
Query: 143 DSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADRE 182
++L + N+ H E GK AP P NS RE
Sbjct: 255 EALN--IPPENQNDHEEEEGK-APVPPRHHDKSNSYRHRE 291
>gi|169636418 mitochondrial ribosomal protein L38 [Homo sapiens]
Length = 380
Score = 30.8 bits (68), Expect = 1.3
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 60 LETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTC 95
L TSLD LL+ A++ H+L++NI + V + TC
Sbjct: 217 LLTSLDGHLLEPDAEYLHWLLTNIPGNRVAEGQVTC 252
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 30.4 bits (67), Expect = 1.8
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 91 CHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLF 150
C+ + ++S ++ + + +PP + L+P V+VG S +++C++ + + +
Sbjct: 7940 CYIENASGKDSCSAQILILEPP-YFVKQLEPVKVSVGDSASLQCQLAGT---PEIGVSWY 7995
Query: 151 RGNETLHYETFGKAAPAPQEATATFNSTADREDG 184
+G+ L T K AT FN + G
Sbjct: 7996 KGDTKLRPTTTYKMHFRNNVATLVFNQVDINDSG 8029
Score = 28.1 bits (61), Expect = 8.7
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 91 CHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLF 150
C ++ + VS +PP + L+P AVG S +++C+V +T+ +
Sbjct: 6058 CEIENEAGRDVCGALVSTLEPP-YFVTELEPLEAAVGDSVSLQCQVAGT---PEITVSWY 6113
Query: 151 RGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLA 192
+G+ L + AT FN + G ++C A
Sbjct: 6114 KGDTKLRPTPEYRTYFTNNVATLVFNKVNINDSG--EYTCKA 6153
>gi|148664211 immunoglobulin superfamily, member 4D isoform 2 [Homo
sapiens]
Length = 414
Score = 30.4 bits (67), Expect = 1.8
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 82 NISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEP 141
+IS + C QES + ++V PPR +++ +Q G+ + C +P
Sbjct: 115 SISDEGRYFCQLYTDPPQESYTT-ITVLVPPRNLMIDIQKDTAVEGEEIEVNCTAMASKP 173
Query: 142 LDSLTLFLFRGNETL 156
+ T+ F+GN L
Sbjct: 174 --ATTIRWFKGNTEL 186
>gi|148664190 immunoglobulin superfamily, member 4D isoform 1 [Homo
sapiens]
Length = 442
Score = 30.4 bits (67), Expect = 1.8
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 82 NISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEP 141
+IS + C QES + ++V PPR +++ +Q G+ + C +P
Sbjct: 115 SISDEGRYFCQLYTDPPQESYTT-ITVLVPPRNLMIDIQKDTAVEGEEIEVNCTAMASKP 173
Query: 142 LDSLTLFLFRGNETL 156
+ T+ F+GN L
Sbjct: 174 --ATTIRWFKGNTEL 186
>gi|118582255 ATP-binding cassette, sub-family C, member 8 [Homo
sapiens]
Length = 1581
Score = 29.6 bits (65), Expect = 3.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 244 LCFIFGQHLRQQRMGTYGVRAAWRRLPQAF 273
LC F +R+ GT G RA W+ L AF
Sbjct: 266 LCEAFDAQVRKDIQGTQGARAIWQALSHAF 295
>gi|208431795 dynactin 4 (p62) isoform c [Homo sapiens]
Length = 403
Score = 29.6 bits (65), Expect = 3.0
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 80 VSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVIL 117
V N++H T+ +C G + +NS V PP++++L
Sbjct: 276 VENLTHVTLFECE---EGDPDDINSTAKVVVPPKELVL 310
>gi|208431793 dynactin 4 (p62) isoform a [Homo sapiens]
Length = 467
Score = 29.6 bits (65), Expect = 3.0
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 80 VSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVIL 117
V N++H T+ +C G + +NS V PP++++L
Sbjct: 340 VENLTHVTLFECE---EGDPDDINSTAKVVVPPKELVL 374
>gi|7705893 dynactin 4 (p62) isoform b [Homo sapiens]
Length = 460
Score = 29.6 bits (65), Expect = 3.0
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 80 VSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVIL 117
V N++H T+ +C G + +NS V PP++++L
Sbjct: 333 VENLTHVTLFECE---EGDPDDINSTAKVVVPPKELVL 367
>gi|221136844 neuroblastoma breakpoint family, member 6 isoform 1
[Homo sapiens]
Length = 667
Score = 29.3 bits (64), Expect = 3.9
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 83 ISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPL 142
+ D++ +C TCS NSN QP R +T + V + +E P E
Sbjct: 201 VPQDSLEECAVTCSNSHNPSNSN----QPHRSTKITFKEH--EVDSALVVESEHPHDEEE 254
Query: 143 DSLTLFLFRGNETLHYETFGKAAPAPQ 169
++L + N+ H E GKA P+
Sbjct: 255 EALN--IPPENQNDHEEEEGKAPVPPR 279
>gi|45505167 immunoglobulin superfamily, member 1 isoform 1 [Homo
sapiens]
Length = 1336
Score = 28.9 bits (63), Expect = 5.1
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 21/132 (15%)
Query: 25 KVFEVHVRPKK-LAVEPKGSLEV--NCSTTCNQPEVGGLETSLDKILLDEQAQW------ 75
K++ PK L P +++ N S C P V G+ +L K D+ Q+
Sbjct: 313 KIWVTDTFPKTWLLARPSAVVQMGQNVSLRCRGP-VDGVGLALYKKGEDKPLQFLDATSI 371
Query: 76 ---KHYLVSNISH-DT-VLQCHFTCSGKQE-SMNSNVSVY-----QPPRQVILTLQPTLV 124
+ ++N+++ DT + CH+ + K M S+ +V +PP+ + T+
Sbjct: 372 DDNTSFFLNNVTYSDTGIYSCHYLLTWKTSIRMPSHNTVELMVVDKPPKPSLSAWPSTVF 431
Query: 125 AVGKSFTIECRV 136
+GK+ T++CRV
Sbjct: 432 KLGKAITLQCRV 443
>gi|24308334 family with sequence similarity 120B [Homo sapiens]
Length = 910
Score = 28.9 bits (63), Expect = 5.1
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 61 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGK-QESMNSNVSVYQPPRQVILTL 119
+T + K+ Q + YLV NI ++C T + +++ S +Y+P RQ + +L
Sbjct: 573 DTEILKVARTHHVQAESYLVYNIMSSGEIECSNTLEDELDQALPSQAFIYRPIRQRVYSL 632
>gi|11559929 coatomer protein complex, subunit gamma 1 [Homo
sapiens]
Length = 874
Score = 28.5 bits (62), Expect = 6.7
Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 8/123 (6%)
Query: 134 CRVPTVEPLDS-LTLFLFRGNETLHY---ETFGKAAPAPQEATATFNSTADR--EDGHRN 187
C + P S L LF L Y T K A A N + D +R+
Sbjct: 280 CSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDSNRS 339
Query: 188 FSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT--SVLLC 245
+ LA+ L+ G ++ +SD V++V +S L + +VL+
Sbjct: 340 IATLAITTLLKTGSESSIDRLMKQISSFMSEISDEFKVVVVQAISALCQKYPRKHAVLMN 399
Query: 246 FIF 248
F+F
Sbjct: 400 FLF 402
>gi|112293287 tudor domain containing 7 [Homo sapiens]
Length = 1098
Score = 28.5 bits (62), Expect = 6.7
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 15/81 (18%)
Query: 25 KVFEVHVRPKK-----LAVEPKGSLEVNCSTTCNQPEVGGLETSLDKIL---LDEQAQWK 76
K+F V + K + + G ++N + TC L+ DK L L A +
Sbjct: 602 KIFAVEILDKADIPLVVLYDTSGEDDININATC-------LKAICDKSLEVHLQVDAMYT 654
Query: 77 HYLVSNISHDTVLQCHFTCSG 97
+ V+NI D L C C G
Sbjct: 655 NVKVTNICSDGTLYCQVPCKG 675
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,640,948
Number of Sequences: 37866
Number of extensions: 451200
Number of successful extensions: 1120
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 51
length of query: 275
length of database: 18,247,518
effective HSP length: 101
effective length of query: 174
effective length of database: 14,423,052
effective search space: 2509611048
effective search space used: 2509611048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.