Guide to the Human Genome
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Name: ICAM1 Sequence: fasta or formatted (532aa) NCBI GI: 167466198
Description:

intercellular adhesion molecule 1 precursor

Referenced in:

Additional Immunoglobulin-related Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         36           3
 C cysteine            2.6         14           1
 D aspartate           2.8         15           1
 E glutamate           6.4         34           1
 F phenylalanine       1.9         10           1
 G glycine             6.8         36           2
 H histidine           0.9          5           2
 I isoleucine          2.3         12           2
 K lysine              4.3         23           2
 L leucine            11.7         62           3
 M methionine          0.9          5           1
 N asparagine          4.1         22           2
 P proline             9.4         50           2
 Q glutamine           5.8         31           2
 R arginine            5.6         30           2
 S serine              6.2         33           2
 T threonine           9.2         49           3
 V valine              9.0         48           2
 W tryptophan          0.9          5           1
 Y tyrosine            2.3         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   intercellular adhesion molecule 1 precursor 
ICAM3                 0.417   intercellular adhesion molecule 3 precursor 
ICAM5                 0.386   intercellular adhesion molecule 5 precursor 
ICAM2                 0.073   intercellular adhesion molecule 2 precursor 
ICAM2                 0.073   intercellular adhesion molecule 2 precursor 
ICAM2                 0.073   intercellular adhesion molecule 2 precursor 
ICAM2                 0.073   intercellular adhesion molecule 2 precursor 
ICAM2                 0.073   intercellular adhesion molecule 2 precursor 
VCAM1                 0.034   vascular cell adhesion molecule 1 isoform b precurso...
ICAM4                 0.028   intercellular adhesion molecule 4 isoform 1 precursor...
ICAM4                 0.028   intercellular adhesion molecule 4 isoform 2 precurso...
HMCN2                 0.024   PREDICTED: hemicentin 2 
HMCN2                 0.024   PREDICTED: hemicentin 2 
HMCN2                 0.024   PREDICTED: hemicentin 2 
BCAM                  0.021   basal cell adhesion molecule isoform 2 precursor [Ho...
BCAM                  0.021   basal cell adhesion molecule isoform 1 precursor [Ho...
VCAM1                 0.020   vascular cell adhesion molecule 1 isoform a precursor...
HMCN1                 0.019   hemicentin 1 
ROBO2                 0.019   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.019   roundabout, axon guidance receptor, homolog 2 isofor...
CADM3                 0.019   cell adhesion molecule 3 isoform 2 
CADM3                 0.019   cell adhesion molecule 3 isoform 1 
MYLK                  0.019   myosin light chain kinase isoform 3A 
MYLK                  0.019   myosin light chain kinase isoform 1 
MAG                   0.019   myelin associated glycoprotein isoform a precursor [...
MAG                   0.019   myelin associated glycoprotein isoform b precursor [...
NPHS1                 0.018   nephrin precursor 
CADM2                 0.017   immunoglobulin superfamily, member 4D 
CD22                  0.016   CD22 molecule 
IGSF9B                0.016   immunoglobulin superfamily, member 9B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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