Guide to the Human Genome
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Name: ICAM4 Sequence: fasta or formatted (237aa) NCBI GI: 12545402
Description:

intercellular adhesion molecule 4 isoform 2 precursor

Referenced in:

Additional Immunoglobulin-related Receptors
Hematopoiesis and Erythrocytes

Other entries for this name:
alt prot [271aa] intercellular adhesion molecule 4 isoform 1 precursor
alt prot [272aa] intercellular adhesion molecule 4 isoform 3 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         18           3
 C cysteine            2.5          6           1
 D aspartate           1.7          4           1
 E glutamate           2.5          6           1
 F phenylalanine       3.8          9           2
 G glycine             7.6         18           1
 H histidine           2.1          5           1
 I isoleucine          2.1          5           1
 K lysine              3.4          8           1
 L leucine            12.7         30           2
 M methionine          1.3          3           1
 N asparagine          2.5          6           1
 P proline             8.9         21           2
 Q glutamine           3.8          9           1
 R arginine            7.6         18           2
 S serine              9.7         23           2
 T threonine           6.3         15           1
 V valine              8.9         21           2
 W tryptophan          2.1          5           1
 Y tyrosine            3.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   intercellular adhesion molecule 4 isoform 2 precurso... 
ICAM4                 0.983   intercellular adhesion molecule 4 isoform 1 precursor...
ICAM4                 0.540   intercellular adhesion molecule 4 isoform 3 precurso...
ICAM5                 0.141   intercellular adhesion molecule 5 precursor 
ICAM2                 0.115   intercellular adhesion molecule 2 precursor 
ICAM2                 0.115   intercellular adhesion molecule 2 precursor 
ICAM2                 0.115   intercellular adhesion molecule 2 precursor 
ICAM2                 0.115   intercellular adhesion molecule 2 precursor 
ICAM2                 0.115   intercellular adhesion molecule 2 precursor 
ICAM3                 0.104   intercellular adhesion molecule 3 precursor 
ICAM1                 0.063   intercellular adhesion molecule 1 precursor 
VCAM1                 0.059   vascular cell adhesion molecule 1 isoform a precursor...
VCAM1                 0.043   vascular cell adhesion molecule 1 isoform b precurso...
DISP2                 0.026   dispatched B 
LOC100293453          0.022   PREDICTED: hypothetical protein 
LOC100288459          0.022   PREDICTED: hypothetical protein 
LOC100288459          0.022   PREDICTED: hypothetical protein XP_002343705 
PKD1L1                0.017   polycystin-1L1 
DUSP8                 0.015   dual specificity phosphatase 8 
TENC1                 0.013   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.013   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.013   tensin like C1 domain containing phosphatase isoform...
MADCAM1               0.011   mucosal vascular addressin cell adhesion molecule 1...
MADCAM1               0.011   mucosal vascular addressin cell adhesion molecule 1 ...
PCDHGC5               0.011   protocadherin gamma subfamily C, 5 isoform 1 precurs...
SRRM2                 0.011   splicing coactivator subunit SRm300 
PCDHGC5               0.009   protocadherin gamma subfamily C, 5 isoform 2 precurs...
NEO1                  0.009   neogenin homolog 1 
NPHS1                 0.009   nephrin precursor 
PKD1                  0.009   polycystin 1 isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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