Guide to the Human Genome
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Name: ZDBF2 Sequence: fasta or formatted (2354aa) NCBI GI: 151301098
Description:

zinc finger, DBF-type containing 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2        100           3
 C cysteine            2.3         55           2
 D aspartate           7.4        174           3
 E glutamate           8.8        206           5
 F phenylalanine       2.6         61           2
 G glycine             3.2         76           1
 H histidine           3.5         82           2
 I isoleucine          4.4        104           2
 K lysine              9.3        219           4
 L leucine             6.9        163           2
 M methionine          1.4         34           2
 N asparagine          4.6        109           2
 P proline             5.4        126           3
 Q glutamine           5.3        125           3
 R arginine            4.2         99           3
 S serine             12.2        287           4
 T threonine           3.8         89           2
 V valine              7.6        180           2
 W tryptophan          0.6         13           1
 Y tyrosine            2.2         52           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, DBF-type containing 2 
TRIP11                0.006   thyroid hormone receptor interactor 11 
DSPP                  0.006   dentin sialophosphoprotein preproprotein 
GOLGA4                0.006   golgi autoantigen, golgin subfamily a, 4 
DBF4                  0.005   activator of S phase kinase 
APP                   0.005   amyloid beta A4 protein isoform a precursor 
APP                   0.005   amyloid beta A4 protein isoform f precursor 
CENPE                 0.005   centromere protein E 
MYST4                 0.005   MYST histone acetyltransferase (monocytic leukemia)...
FILIP1L               0.005   filamin A interacting protein 1-like isoform 3 [Hom...
FILIP1L               0.005   filamin A interacting protein 1-like isoform 1 [Hom...
KIF20B                0.005   M-phase phosphoprotein 1 
CCDC88A               0.005   coiled-coil domain containing 88A isoform 2 
EEA1                  0.005   early endosome antigen 1, 162kD 
HDAC9                 0.004   histone deacetylase 9 isoform 2 
HDAC9                 0.004   histone deacetylase 9 isoform 5 
HDAC9                 0.004   histone deacetylase 9 isoform 1 
HDAC9                 0.004   histone deacetylase 9 isoform 4 
MPHOSPH8              0.004   M-phase phosphoprotein 8 
FILIP1L               0.004   filamin A interacting protein 1-like isoform 2 [Hom...
APP                   0.004   amyloid beta A4 protein isoform b precursor 
CYTSB                 0.004   spectrin domain with coiled-coils 1 NSP5a3b 
CYTSB                 0.004   spectrin domain with coiled-coils 1 NSP5a3a 
CYTSB                 0.004   spectrin domain with coiled-coils 1 NSP5b3b 
CYTSB                 0.004   spectrin domain with coiled-coils 1 NSP5b3a 
CCDC88A               0.004   coiled-coil domain containing 88A isoform 1 
CLMN                  0.004   calmin 
CRBN                  0.004   cereblon 
DSP                   0.004   desmoplakin isoform I 
LRRIQ1                0.004   leucine-rich repeats and IQ motif containing 1 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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