TRIM5 4994

Name: TRIM5	Sequence: fasta or formatted (347aa)		NCBI GI: 15011944
Description: tripartite motif protein TRIM5 isoform gamma		Referenced in: Additional Interaction Domain Families Tripartite Motif Family
Other entries for this name: alt prot [493aa] tripartite motif protein TRIM5 isoform alpha alt prot [326aa] tripartite motif protein TRIM5 isoform delta
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.7 13 2 C cysteine 4.0 14 1 D aspartate 4.3 15 1 E glutamate 11.5 40 3 F phenylalanine 2.6 9 1 G glycine 4.0 14 1 H histidine 3.5 12 2 I isoleucine 4.3 15 1 K lysine 7.5 26 2 L leucine 13.0 45 3 M methionine 1.7 6 1 N asparagine 3.2 11 1 P proline 3.7 13 2 Q glutamine 6.3 22 2 R arginine 5.8 20 2 S serine 7.2 25 2 T threonine 4.6 16 1 V valine 5.8 20 1 W tryptophan 1.2 4 1 Y tyrosine 2.0 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tripartite motif protein TRIM5 isoform gamma TRIM5 0.853 tripartite motif protein TRIM5 isoform delta TRIM5 0.844 tripartite motif protein TRIM5 isoform alpha TRIM6-TRIM34 0.527 tripartite motif-containing 6 and tripartite motif-c... TRIM6 0.526 tripartite motif-containing 6 isoform 2 TRIM6 0.526 tripartite motif-containing 6 isoform 1 TRIM34 0.501 tripartite motif protein 34 isoform 1 TRIM34 0.501 tripartite motif protein 34 isoform 1 TRIM22 0.483 tripartite motif-containing 22 TRIM34 0.441 tripartite motif protein 34 isoform 3 TRIM21 0.323 tripartite motif protein 21 TRIM58 0.279 tripartite motif-containing 58 TRIM68 0.261 ring finger protein 137 TRIM38 0.241 tripartite motif-containing 38 TRIM11 0.238 tripartite motif-containing 11 TRIM17 0.210 tripartite motif-containing 17 isoform 3 TRIM17 0.210 tripartite motif-containing 17 isoform 1 TRIM17 0.210 tripartite motif-containing 17 isoform 1 TRIM27 0.201 ret finger protein TRIM31 0.198 tripartite motif protein 31 TRIM4 0.197 tripartite motif protein TRIM4 isoform beta TRIM39 0.194 tripartite motif-containing 39 isoform 2 TRIM10 0.189 tripartite motif-containing 10 isoform 1 TRIM10 0.189 tripartite motif-containing 10 isoform 2 TRIM39 0.189 tripartite motif-containing 39 isoform 1 TRIM7 0.181 tripartite motif-containing 7 isoform 1 TRIM17 0.181 tripartite motif-containing 17 isoform 2 TRIM4 0.179 tripartite motif protein TRIM4 isoform alpha TRIM26 0.179 tripartite motif-containing 26 TRIM60 0.170 ring finger protein 129 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.