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Search of human proteins with 149588930
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
(363 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens] 737 0.0
gi|45593144 gastrulation brain homeo box 2 [Homo sapiens] 271 9e-73
gi|89257348 homeo box HB9 [Homo sapiens] 101 1e-21
gi|23510368 homeobox D11 [Homo sapiens] 98 1e-20
gi|13273315 homeobox B4 [Homo sapiens] 97 2e-20
gi|148613882 homeobox A4 [Homo sapiens] 94 1e-19
gi|24497538 homeobox C4 [Homo sapiens] 93 3e-19
gi|24497540 homeobox C4 [Homo sapiens] 93 3e-19
gi|24497517 homeobox A5 [Homo sapiens] 92 6e-19
gi|19923391 homeobox D3 [Homo sapiens] 91 2e-18
gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] 90 3e-18
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 89 8e-18
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 88 1e-17
gi|24497513 homeobox A3 isoform a [Homo sapiens] 87 2e-17
gi|13562112 homeobox A3 isoform a [Homo sapiens] 87 2e-17
gi|157743259 H6 family homeobox 3 [Homo sapiens] 87 2e-17
gi|84570137 homeobox B3 [Homo sapiens] 87 2e-17
gi|4504465 homeobox B2 [Homo sapiens] 87 2e-17
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 87 3e-17
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 87 3e-17
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 87 3e-17
gi|24497589 aristaless related homeobox [Homo sapiens] 86 4e-17
gi|4504469 homeobox B5 [Homo sapiens] 86 5e-17
gi|4503615 even-skipped homeobox 1 [Homo sapiens] 86 7e-17
gi|23397672 homeobox D4 [Homo sapiens] 85 9e-17
gi|226437602 NK1 homeobox 2 [Homo sapiens] 84 2e-16
gi|182765442 homeobox A10 isoform a [Homo sapiens] 84 2e-16
gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens] 84 2e-16
gi|152963644 paired-like homeodomain transcription factor 1 [Hom... 84 3e-16
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 84 3e-16
>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
Length = 363
Score = 737 bits (1902), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQA 60
MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQA
Sbjct: 1 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQA 60
Query: 61 LAPAPLPAGLPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQE 120
LAPAPLPAGLPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQE
Sbjct: 61 LAPAPLPAGLPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQE 120
Query: 121 LAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPA 180
LAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPA
Sbjct: 121 LAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPA 180
Query: 181 EGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSL 240
EGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSL
Sbjct: 181 EGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSL 240
Query: 241 GTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL 300
GTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL
Sbjct: 241 GTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL 300
Query: 301 SEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQG 360
SEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQG
Sbjct: 301 SEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQG 360
Query: 361 ARP 363
ARP
Sbjct: 361 ARP 363
>gi|45593144 gastrulation brain homeo box 2 [Homo sapiens]
Length = 348
Score = 271 bits (692), Expect = 9e-73
Identities = 187/360 (51%), Positives = 212/360 (58%), Gaps = 44/360 (12%)
Query: 20 GPGTAFSIDSLIGPPP-PRSGHLLYTGYPMFMPYRPLVLPQ------ALAPAPLPAGLPP 72
G TAFSIDSLIG PP P GH +YTGYPMFMPYRP+VLP AL A L LPP
Sbjct: 17 GSSTAFSIDSLIGSPPQPSPGHFVYTGYPMFMPYRPVVLPPPPPPPPALPQAALQPALPP 76
Query: 73 LAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYG-PQELAAAAAAAAAT 131
P L FC+ L Q + ALT+ L A P F PQ AAAA A
Sbjct: 77 AHPHHQIPS-LPTGFCSSLAQGM----ALTSTL--MATLPGGFSASPQHQEAAAARKFAP 129
Query: 132 AARNNPEPGGRRPEGGLEADELLPAREK-----VAEPPPPPPPHFSETFP-SLPAEGKVY 185
P PGG G + E L A + +A+ +ET SL +
Sbjct: 130 ----QPLPGG----GNFDKAEALQADAEDGKGFLAKEGSLLAFSAAETVQASLVGAVRGQ 181
Query: 186 SSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTGAE 245
DE K+E DP G +EE +S+ D D + G A P G E
Sbjct: 182 GKDESKVE---DDPKG---KEESFSLESDVDYSSDDNLTGQAAHKEEDP------GHALE 229
Query: 246 EGAPVT--AGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEV 303
E P + AG T GK+RRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEV
Sbjct: 230 ETPPSSGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEV 289
Query: 304 QVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVHVNRFAVRSQHQQMEQGARP 363
QVKIWFQNRRAKWKR+KAGN +S++GEP RNPKIVVPIPVHV+RFA+RSQHQQ+EQ ARP
Sbjct: 290 QVKIWFQNRRAKWKRVKAGNANSKTGEPSRNPKIVVPIPVHVSRFAIRSQHQQLEQ-ARP 348
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 101 bits (251), Expect = 1e-21
Identities = 104/327 (31%), Positives = 123/327 (37%), Gaps = 71/327 (21%)
Query: 4 AGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQALAP 63
A S GG GGGGG GT+ S PP L P P R L AL P
Sbjct: 35 AAAASGTGGGGGGGGASGGTSGSCSPASSEPPAAPADRLRAESPS--PPRLLAAHCALLP 92
Query: 64 APLPAGLPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQELAA 123
P F G G G P A P AA
Sbjct: 93 KP------------GFLGAGGGGGGTGGGHGGPHHHA----------------HPGAAAA 124
Query: 124 AAAAAAATAARN---NPEPGGRRPEGGLEADELLPARE-------KVAEPPPPPPPHFSE 173
AAAAAAA AA PGG + GL A L A P S
Sbjct: 125 AAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAALYGHPVYGYSAAAAAAALAGQHPALSY 184
Query: 174 TFPSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPK 233
++P + + +D KL A G + D +L +S G +L
Sbjct: 185 SYPQVQGAHPAHPADPIKLGA----------------GTFQLDQWLRASTAG--MILPKM 226
Query: 234 PKLKGSLGTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQ 293
P + GK RR RTAFTS+QLLELE +F KYLS +R +
Sbjct: 227 PDFNSQAQSNLL-------------GKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFE 273
Query: 294 IAHALKLSEVQVKIWFQNRRAKWKRIK 320
+A +L L+E QVKIWFQNRR KWKR K
Sbjct: 274 VATSLMLTETQVKIWFQNRRMKWKRSK 300
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 97.8 bits (242), Expect = 1e-20
Identities = 82/240 (34%), Positives = 113/240 (47%), Gaps = 28/240 (11%)
Query: 116 YGPQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPP--PPHFSE 173
Y P AAAAAAAAA AA P G D L A E V P PP P +
Sbjct: 103 YAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAAS 162
Query: 174 TFPS-LPAEGKVYSSDEEKLEASAGDPAGSEQ--------EEEGSGGDSEDDGFLDSSAG 224
F S + G + ++ EA+ G P Q + EG+ D G + AG
Sbjct: 163 NFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPPPPPAPPQPEGAA----DKGDPRTGAG 218
Query: 225 GPG------ALLGPKPK--LKGSLGTG----AEEGAPVTAGVTAPGGKSRRRRTAFTSEQ 272
G G A G +PK +GS G G E GA ++ AP +SR++R +T Q
Sbjct: 219 GGGGSPCTKATPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQ-RSRKKRCPYTKYQ 277
Query: 273 LLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPV 332
+ ELE+EF Y++ +R Q++ L L++ QVKIWFQNRR K K++ + +G P+
Sbjct: 278 IRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPL 337
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 97.4 bits (241), Expect = 2e-20
Identities = 65/195 (33%), Positives = 85/195 (43%), Gaps = 53/195 (27%)
Query: 163 PPPPPPPHFSETFPSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSS 222
PPPPPPP S P+ P G + ++ EA + P
Sbjct: 81 PPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPP---------------------- 118
Query: 223 AGGPGALLGPKPKLKGSLGTGAEEGA---PV-----------TAGVTAPGGKSRRRRTAF 268
P P + L A PV T GG+ +R RTA+
Sbjct: 119 ---------PPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAY 169
Query: 269 TSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWK--------RIK 320
T +Q+LELEKEFH +YL+ R +IAHAL LSE Q+KIWFQNRR KWK +I+
Sbjct: 170 TRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIR 229
Query: 321 AGNVSSRSGEPVRNP 335
+G + +G P P
Sbjct: 230 SGGAAGSAGGPPGRP 244
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 94.4 bits (233), Expect = 1e-19
Identities = 103/337 (30%), Positives = 128/337 (37%), Gaps = 83/337 (24%)
Query: 8 SAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQALAPAPLP 67
S GG GG GGGPG PP P + HL PL PQ LP
Sbjct: 27 SGSGGADGGPGGGPGYQ-------QPPAPPTQHL------------PLQQPQ------LP 61
Query: 68 AGLPPLAPLASF-AGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQELAAAAA 126
P AS+ A R P+ A TA P YG + A
Sbjct: 62 HAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYP---------YGYR----GGA 108
Query: 127 AAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPAEGKVYS 186
+ P + P GL A +L +P PPP P+ P
Sbjct: 109 SPGRPPQPEQPPAQAKGPAHGLHASHVL-------QPQLPPPLQPRAVPPAAPRRC---- 157
Query: 187 SDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPK-LKGSLGTGAE 245
E A+ G PAG S+ P L P LKG
Sbjct: 158 ---EAAPATPGVPAGG------------------SAPACPLLLADKSPLGLKGKEPVVYP 196
Query: 246 EGAPVTAGVTAP---GGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSE 302
+ P GG+ +R RTA+T +Q+LELEKEFH +YL+ R +IAH L LSE
Sbjct: 197 WMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSE 256
Query: 303 VQVKIWFQNRRAKWK--------RIKAGNVSSRSGEP 331
QVKIWFQNRR KWK ++++ N +S S P
Sbjct: 257 RQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGP 293
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 93.2 bits (230), Expect = 3e-19
Identities = 68/205 (33%), Positives = 94/205 (45%), Gaps = 17/205 (8%)
Query: 135 NNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPAEGKVYSSDEEKLEA 194
++PE GR E G + +++ PPPP P + + +G S +A
Sbjct: 32 HSPEYYGRTRESGFQHHH-----QELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQA 86
Query: 195 SAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTGAEEGAP----- 249
P S+ E + G S + P A P P S + P
Sbjct: 87 GHHHPEKSQSLCE----PAPLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKI 142
Query: 250 --VTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKI 307
T GG+ +R RTA+T +Q+LELEKEFH +YL+ R +IAH+L LSE Q+KI
Sbjct: 143 HVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKI 202
Query: 308 WFQNRRAKWKR-IKAGNVSSRSGEP 331
WFQNRR KWK+ + N RS P
Sbjct: 203 WFQNRRMKWKKDHRLPNTKVRSAPP 227
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 93.2 bits (230), Expect = 3e-19
Identities = 68/205 (33%), Positives = 94/205 (45%), Gaps = 17/205 (8%)
Query: 135 NNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPAEGKVYSSDEEKLEA 194
++PE GR E G + +++ PPPP P + + +G S +A
Sbjct: 32 HSPEYYGRTRESGFQHHH-----QELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQA 86
Query: 195 SAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTGAEEGAP----- 249
P S+ E + G S + P A P P S + P
Sbjct: 87 GHHHPEKSQSLCE----PAPLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKI 142
Query: 250 --VTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKI 307
T GG+ +R RTA+T +Q+LELEKEFH +YL+ R +IAH+L LSE Q+KI
Sbjct: 143 HVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKI 202
Query: 308 WFQNRRAKWKR-IKAGNVSSRSGEP 331
WFQNRR KWK+ + N RS P
Sbjct: 203 WFQNRRMKWKKDHRLPNTKVRSAPP 227
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 92.4 bits (228), Expect = 6e-19
Identities = 65/188 (34%), Positives = 87/188 (46%), Gaps = 12/188 (6%)
Query: 141 GRRPEGGLEADELLPAREKVAEP------PPPPPPHFSETFPSLPAE----GKVYSSDEE 190
G R + PA + ++P P P P S PS ++ GK S+
Sbjct: 67 GERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNSLSNSS 126
Query: 191 KLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTGAEEGAPV 250
A AG S +E G+ +E+D S + P P + + +
Sbjct: 127 GASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHIS 186
Query: 251 TAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQ 310
+ P GK R RTA+T Q LELEKEFH +YL+ R +IAHAL LSE Q+KIWFQ
Sbjct: 187 HDNIGGPEGK--RARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQ 244
Query: 311 NRRAKWKR 318
NRR KWK+
Sbjct: 245 NRRMKWKK 252
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 90.5 bits (223), Expect = 2e-18
Identities = 76/249 (30%), Positives = 110/249 (44%), Gaps = 45/249 (18%)
Query: 106 PSFAEPPDAFYGPQELAAAAAAAAATAARNNPE-------PGGRRPEGGLEADELLPARE 158
P+ A D Y + ++A A E PG +GG +
Sbjct: 53 PAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLNS 112
Query: 159 KVAEPPPPPPPHFSETFPSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGF 218
+ P PPPPP P+LP +S +P G ++ GG +
Sbjct: 113 EQQPPQPPPPP------PTLPP-------------SSPTNPGGGVPAKKPKGGPN----- 148
Query: 219 LDSSAGGPGALLGPK--PKLKGSLGTGAEEGAPVTAGVTA-----PGGKSRRRRTAFTSE 271
A A + + P +K S ++ + TAG + PG S+R RTA+TS
Sbjct: 149 ----ASSSSATISKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSA 204
Query: 272 QLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR-IKAGNV--SSRS 328
QL+ELEKEFH +YL R ++A+ L L+E Q+KIWFQNRR K+K+ KA + S S
Sbjct: 205 QLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPAS 264
Query: 329 GEPVRNPKI 337
P R+P +
Sbjct: 265 QSPERSPPL 273
>gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]
Length = 254
Score = 90.1 bits (222), Expect = 3e-18
Identities = 80/270 (29%), Positives = 107/270 (39%), Gaps = 53/270 (19%)
Query: 73 LAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQELAAAAAAA---- 128
L P A G L N G G + LP + P +F+ + A A AA
Sbjct: 12 LQPPAPVWGCLRNPHSEGNG---------ASGLPHYPPTPFSFHQKPDFLATATAAYPDF 62
Query: 129 AATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPAEGKVYSSD 188
+A+ P LP E + F+E P+ P +
Sbjct: 63 SASCLAATPHS--------------LPQEEHI----------FTEQHPAFPQSPNWHFPV 98
Query: 189 EEKLEASAGDPAGSEQEE--------EGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSL 240
+ PAG +E + +GG +D G L S+A + + K S
Sbjct: 99 SDARRRPNSGPAGGSKEMGTSSLGLVDTTGGPGDDYGVLGSTAN--------ETEKKSSR 150
Query: 241 GTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL 300
G K+R+ RTAFT EQL ELE EF YL+ R +IA L L
Sbjct: 151 RRKESSDNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDL 210
Query: 301 SEVQVKIWFQNRRAKWKRIKAGNVSSRSGE 330
SE QVK+WFQNRR KWKR+K G S +G+
Sbjct: 211 SERQVKVWFQNRRMKWKRVKGGQPISPNGQ 240
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 88.6 bits (218), Expect = 8e-18
Identities = 89/315 (28%), Positives = 122/315 (38%), Gaps = 57/315 (18%)
Query: 54 PLVLPQALAPAPLPAGLP-PLAPLASFAGRLTNTF-----------CAGLGQAVPSMVAL 101
PL + AP AG P APL + + + C LG P+ A
Sbjct: 17 PLAASDTVPAAPEGAGAARPAAPLRPTSFSVLDILDPNKFNSRRRRCVLLGPVAPAACAP 76
Query: 102 TTALPSFAEPPDAFYGP-----QELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPA 156
+ P P + P + A A A A P G G E ++
Sbjct: 77 CASAPCAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGY 136
Query: 157 REKVAEPPPPPPPHFSETFPSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGD---- 212
P +++ +P + D+++ EA + A +E G GG
Sbjct: 137 SSGGGGHSPS-----ADSGDEVPDD-----EDDDEDEAPETEAARGAEEARGGGGGLGAR 186
Query: 213 -SEDDGFLDSSAGGPGALL------GPKPKLKGSLGTGAEEGAPVTAGVTAPG------- 258
S G ++ A PGA + GP+ + G AP AG T G
Sbjct: 187 GSGCQGAAETDAS-PGATVDEAAAPGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKP 245
Query: 259 -----------GKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKI 307
GK RR RTAFT EQL+ LE +F +YLS+ ER +A +L L+E QVKI
Sbjct: 246 KRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKI 305
Query: 308 WFQNRRAKWKRIKAG 322
WFQNRR KWK+ G
Sbjct: 306 WFQNRRTKWKKQNPG 320
Score = 28.5 bits (62), Expect = 9.8
Identities = 26/71 (36%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 8 SAPGGNGGGGGGGPGTAFSID---SLIGPPPPRSGHLLY---TGYPMFMPYRPLVLPQAL 61
SAP G GGG G G G + S + P PP L GYP P LV L
Sbjct: 324 SAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGP-GGLVCAAQL 382
Query: 62 APAPLPAGLPP 72
PA L P
Sbjct: 383 PFLSSPAVLSP 393
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 87.8 bits (216), Expect = 1e-17
Identities = 80/269 (29%), Positives = 109/269 (40%), Gaps = 45/269 (16%)
Query: 88 CAGLGQAVPSMVALTTALPSFAEPPDAFYGP-----QELAAAAAAAAATAARNNPEPGGR 142
C LG P+ A + P P + P + A A A A P G
Sbjct: 466 CVLLGPVAPAACAPCASAPCAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDP 525
Query: 143 RPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPAEGKVYSSDEEKLEASAGDPAGS 202
G E ++ P +++ +P + D+++ EA + A
Sbjct: 526 FKAGEAETNDTNGYSSGGGGHSPS-----ADSGDEVPDD-----EDDDEDEAPETEAARG 575
Query: 203 EQEEEGSGGD-----SEDDGFLDSSAGGPGALL----GPKPKLKGSLGTGAEEGA--PVT 251
+E G GG S G ++ A PGA + P P+ + G GA P
Sbjct: 576 AEEARGGGGGLGARGSGCQGAAETDAS-PGATVDEAAAPGPRENSPVAPGPPGGAAAPGG 634
Query: 252 AGVTAPG------------------GKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQ 293
AG T G GK RR RTAFT EQL+ LE +F +YLS+ ER
Sbjct: 635 AGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLN 694
Query: 294 IAHALKLSEVQVKIWFQNRRAKWKRIKAG 322
+A +L L+E QVKIWFQNRR KWK+ G
Sbjct: 695 LALSLSLTETQVKIWFQNRRTKWKKQNPG 723
Score = 28.5 bits (62), Expect = 9.8
Identities = 26/71 (36%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 8 SAPGGNGGGGGGGPGTAFSID---SLIGPPPPRSGHLLY---TGYPMFMPYRPLVLPQAL 61
SAP G GGG G G G + S + P PP L GYP P LV L
Sbjct: 727 SAPTGGGGGPGPGAGPGTGLPGGLSPLSPSPPMGAPLGMHGPAGYPAHGP-GGLVCAAQL 785
Query: 62 APAPLPAGLPP 72
PA L P
Sbjct: 786 PFLSSPAVLSP 796
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 87.4 bits (215), Expect = 2e-17
Identities = 70/244 (28%), Positives = 104/244 (42%), Gaps = 22/244 (9%)
Query: 114 AFYGPQELAAAAAAAAATAARNNPEPGGRRPE---GGLEADELLPAREKVAEPPPPPPPH 170
A+ Q+ A+AA A + P + P G +A EL A + PP PP
Sbjct: 25 AYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPS 84
Query: 171 FSE---------TFPSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDS 221
E P P + A+ P+ + + S + +
Sbjct: 85 LGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSP 144
Query: 222 SAGGPGALLGPKPKLKGSLGTGAEEGAPVTAGVTAPGGKS-------RRRRTAFTSEQLL 274
P P +K S ++ + ++G + G KS +R RTA+TS QL+
Sbjct: 145 LLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLV 204
Query: 275 ELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGN---VSSRSGEP 331
ELEKEFH +YL R ++A+ L L+E Q+KIWFQNRR K+K+ + G SS P
Sbjct: 205 ELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSP 264
Query: 332 VRNP 335
R+P
Sbjct: 265 SRSP 268
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 87.4 bits (215), Expect = 2e-17
Identities = 70/244 (28%), Positives = 104/244 (42%), Gaps = 22/244 (9%)
Query: 114 AFYGPQELAAAAAAAAATAARNNPEPGGRRPE---GGLEADELLPAREKVAEPPPPPPPH 170
A+ Q+ A+AA A + P + P G +A EL A + PP PP
Sbjct: 25 AYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQPPS 84
Query: 171 FSE---------TFPSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDS 221
E P P + A+ P+ + + S + +
Sbjct: 85 LGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSP 144
Query: 222 SAGGPGALLGPKPKLKGSLGTGAEEGAPVTAGVTAPGGKS-------RRRRTAFTSEQLL 274
P P +K S ++ + ++G + G KS +R RTA+TS QL+
Sbjct: 145 LLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLV 204
Query: 275 ELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGN---VSSRSGEP 331
ELEKEFH +YL R ++A+ L L+E Q+KIWFQNRR K+K+ + G SS P
Sbjct: 205 ELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSP 264
Query: 332 VRNP 335
R+P
Sbjct: 265 SRSP 268
>gi|157743259 H6 family homeobox 3 [Homo sapiens]
Length = 357
Score = 87.4 bits (215), Expect = 2e-17
Identities = 82/278 (29%), Positives = 115/278 (41%), Gaps = 41/278 (14%)
Query: 106 PSFAEPPDAFYGPQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPP 165
P PP + P AAAAAAAAA AA G D P R ++
Sbjct: 46 PKPQPPPRTLFAPAS-AAAAAAAAAAAAAKGALEGAAGFALSQVGDLAFP-RFEIPAQRF 103
Query: 166 PPPPHFSETFPS-------LPAEGKVYSSD-EEKLEASAGDPAGSEQEEEGSGGDSEDDG 217
P H+ E P+ PA G + + EK PA + D
Sbjct: 104 ALPAHYLERSPAWWYPYTLTPAGGHLPRPEASEKALLRDSSPASGTDRDSPEPLLKADPD 163
Query: 218 FLDSSAGGPGALL-----GPKPKLKGSLGTGAEEGAPVTAGVTAPGG------------- 259
+ + P ++ + K +G GA GA V A PG
Sbjct: 164 HKELDSKSPDEIILEESDSEESKKEGEAAPGA-AGASVGAAAATPGAEDWKKGAESPEKK 222
Query: 260 ---KSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKW 316
+ ++ RT F+ Q+ +LE F K+YLS +ER+ +A +L L+E QVKIWFQNRR KW
Sbjct: 223 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 282
Query: 317 KR-----IKAGNVSSRSGEPVRNPKIVVPIPVHVNRFA 349
KR ++A N+S + + + + VPI H N A
Sbjct: 283 KRQLAAELEAANLSHAAAQRI----VRVPILYHENSAA 316
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 87.4 bits (215), Expect = 2e-17
Identities = 84/268 (31%), Positives = 112/268 (41%), Gaps = 50/268 (18%)
Query: 71 PPLAPLASFAGRLTNTFCA--GLGQAVPSMVALTTALPSFAEPPDAFYGPQELAAAAAA- 127
PP G + C+ LG A P A + L P P+ L+A +
Sbjct: 35 PPFQAATHLEGDYQRSACSLQSLGNAAPH--AKSKELNGSCMRPGL--APEPLSAPPGSP 90
Query: 128 ---AAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPAEGKV 184
AA T+A +N GG + G PP P + T
Sbjct: 91 PPSAAPTSATSNSSNGGGPSKSG----------------PPKCGPGTNSTLTKQIFPWMK 134
Query: 185 YSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTGA 244
S KL+ ++ A E G GG G S GG G G G
Sbjct: 135 ESRQTSKLKNNSPGTA----EGCGGGGGGGGGGGSGGSGGGGGG------------GGGG 178
Query: 245 EEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQ 304
++ P +A S+R RTA+TS QL+ELEKEFH +YL R ++A+ L LSE Q
Sbjct: 179 DKSPPGSAA-------SKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQ 231
Query: 305 VKIWFQNRRAKWKR-IKAGNVSSRSGEP 331
+KIWFQNRR K+K+ KA ++S SG P
Sbjct: 232 IKIWFQNRRMKYKKDQKAKGLASSSGGP 259
Score = 33.9 bits (76), Expect = 0.23
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 5 GGGSAPGGNGGGGGGGPG 22
GGG GG+GGGGGGG G
Sbjct: 160 GGGGGSGGSGGGGGGGGG 177
Score = 32.0 bits (71), Expect = 0.89
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 5 GGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYT 44
GGG GG+GG GGGG G S G + YT
Sbjct: 157 GGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYT 196
Score = 28.9 bits (63), Expect = 7.5
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 5 GGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGY 46
GGG GG GG GGG G D PP + T Y
Sbjct: 156 GGGGGGGGGSGGSGGGGGGGGGGDK--SPPGSAASKRARTAY 195
Score = 28.5 bits (62), Expect = 9.8
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 5 GGGSAPGGNGGGGGGGPG 22
GGG GG GG GG G G
Sbjct: 154 GGGGGGGGGGGSGGSGGG 171
Score = 28.5 bits (62), Expect = 9.8
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 5 GGGSAPGGNGGGGGGGPG 22
GGG GG G GG GG G
Sbjct: 155 GGGGGGGGGGSGGSGGGG 172
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 87.4 bits (215), Expect = 2e-17
Identities = 65/175 (37%), Positives = 79/175 (45%), Gaps = 7/175 (4%)
Query: 148 LEADELLPAREKVAEPPPPPPPHFSETFPSLPAEGKVYSSDEEKLEASAGD--PAGSEQE 205
LE + +E PPPPP F +TFPSL + A G P
Sbjct: 29 LETFQTSSIKESTLIPPPPP---FEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPPPPP 85
Query: 206 EEGSGGDSEDDGFLD-SSAGGPG-ALLGPKPKLKGSLGTGAEEGAPVTAGVTAPGGKSRR 263
+ E + SA P + P P +G A A GG +RR
Sbjct: 86 LPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARR 145
Query: 264 RRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR 318
RTA+T+ QLLELEKEFH KYL R +IA L L+E QVK+WFQNRR K KR
Sbjct: 146 LRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR 200
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 86.7 bits (213), Expect = 3e-17
Identities = 72/231 (31%), Positives = 96/231 (41%), Gaps = 38/231 (16%)
Query: 118 PQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPS 177
PQ+ AA A A R R+ +EA + +R+ V + P + F +
Sbjct: 28 PQKFTRAALPAVRPAPRE-----ARKSLAEVEAGKDASSRDPVRQLETP-----GQGFAA 77
Query: 178 LPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDD------------------GFL 219
+ + +AG AG EGS + E+D G
Sbjct: 78 SLLTRQAHPHHSSDARDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLA 137
Query: 220 DSSAGGPGALLGPKPKLKGSLGTGAEEGAPVTAGVTAPG--------GKSRRRRTAFTSE 271
S GAL +P G G G P + G P K RR RTAFT E
Sbjct: 138 RSPDAPAGALASGEPCEDG--GGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYE 195
Query: 272 QLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAG 322
QL+ LE +F +YLS+ ER +A +L L+E QVKIWFQNRR KWK+ G
Sbjct: 196 QLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 246
Score = 43.1 bits (100), Expect = 4e-04
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 2 QRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQAL 61
Q GG PG GGGGGGG G + P PP +G L + +P + VL +
Sbjct: 252 QVGGGAPQPGAAGGGGGGGSGGS--------PGPPGTGALHFQTFPSYSAAN--VLFPSA 301
Query: 62 APAPLPAGLPPLAPLASFAG 81
A PL A P +P A F G
Sbjct: 302 ASFPLTAAAPG-SPFAPFLG 320
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 86.7 bits (213), Expect = 3e-17
Identities = 72/231 (31%), Positives = 96/231 (41%), Gaps = 38/231 (16%)
Query: 118 PQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPS 177
PQ+ AA A A R R+ +EA + +R+ V + P + F +
Sbjct: 28 PQKFTRAALPAVRPAPRE-----ARKSLAEVEAGKDASSRDPVRQLETP-----GQGFAA 77
Query: 178 LPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDD------------------GFL 219
+ + +AG AG EGS + E+D G
Sbjct: 78 SLLTRQAHPHHSSDARDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLA 137
Query: 220 DSSAGGPGALLGPKPKLKGSLGTGAEEGAPVTAGVTAPG--------GKSRRRRTAFTSE 271
S GAL +P G G G P + G P K RR RTAFT E
Sbjct: 138 RSPDAPAGALASGEPCEDG--GGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYE 195
Query: 272 QLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAG 322
QL+ LE +F +YLS+ ER +A +L L+E QVKIWFQNRR KWK+ G
Sbjct: 196 QLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 246
Score = 43.1 bits (100), Expect = 4e-04
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 2 QRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQAL 61
Q GG PG GGGGGGG G + P PP +G L + +P + VL +
Sbjct: 252 QVGGGAPQPGAAGGGGGGGSGGS--------PGPPGTGALHFQTFPSYSAAN--VLFPSA 301
Query: 62 APAPLPAGLPPLAPLASFAG 81
A PL A P +P A F G
Sbjct: 302 ASFPLTAAAPG-SPFAPFLG 320
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 86.7 bits (213), Expect = 3e-17
Identities = 72/231 (31%), Positives = 96/231 (41%), Gaps = 38/231 (16%)
Query: 118 PQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPS 177
PQ+ AA A A R R+ +EA + +R+ V + P + F +
Sbjct: 28 PQKFTRAALPAVRPAPRE-----ARKSLAEVEAGKDASSRDPVRQLETP-----GQGFAA 77
Query: 178 LPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDD------------------GFL 219
+ + +AG AG EGS + E+D G
Sbjct: 78 SLLTRQAHPHHSSDARDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLA 137
Query: 220 DSSAGGPGALLGPKPKLKGSLGTGAEEGAPVTAGVTAPG--------GKSRRRRTAFTSE 271
S GAL +P G G G P + G P K RR RTAFT E
Sbjct: 138 RSPDAPAGALASGEPCEDG--GGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYE 195
Query: 272 QLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAG 322
QL+ LE +F +YLS+ ER +A +L L+E QVKIWFQNRR KWK+ G
Sbjct: 196 QLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG 246
Score = 43.1 bits (100), Expect = 4e-04
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 2 QRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQAL 61
Q GG PG GGGGGGG G + P PP +G L + +P + VL +
Sbjct: 252 QVGGGAPQPGAAGGGGGGGSGGS--------PGPPGTGALHFQTFPSYSAAN--VLFPSA 301
Query: 62 APAPLPAGLPPLAPLASFAG 81
A PL A P +P A F G
Sbjct: 302 ASFPLTAAAPG-SPFAPFLG 320
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 86.3 bits (212), Expect = 4e-17
Identities = 114/387 (29%), Positives = 153/387 (39%), Gaps = 82/387 (21%)
Query: 23 TAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQAL-------APAPLPAGL---PP 72
+++ IDS++G P LL + P P+ + AP A L P
Sbjct: 25 SSYCIDSILGRRSPCKMRLLGAAQSLPAPLTSRADPEKAVQGSPKSSSAPFEAELHLPPK 84
Query: 73 LAPL-ASFAGRLTNTFCAGLGQAVPSMVALTTALPSFA------EPPDAFYG--PQELAA 123
L L GRL A A + A TA PP A G P A
Sbjct: 85 LRRLYGPGGGRLLQGAAAAAAAAAAAAAAAATATAGPRGEAPPPPPPTARPGERPDGAGA 144
Query: 124 AAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETFPSLPAEGK 183
AAAAAAA AA + + P+ + + RE A P PPPP E L G
Sbjct: 145 AAAAAAAAAAAWDTLKISQAPQVSISRSKSY--RENGA-PFVPPPPALDE----LGGPGG 197
Query: 184 VYSSDEEKLEAS--------AGDPAGSEQEEEGSGGDSEDD------------------- 216
V + EE+L + AG G+E +EE D ED+
Sbjct: 198 V-THPEERLGVAGGPGSAPAAGGGTGTEDDEEELLEDEEDEDEEEELLEDDEEELLEDDA 256
Query: 217 ---------------GFLDSSAGGP----GALLGPKPKL----KGSLGTGAEEGAPVTAG 253
G + ++A G L PK +L + + G E+ ++AG
Sbjct: 257 RALLKEPRRCPVAATGAVAAAAAAAVATEGGELSPKEELLLHPEDAEGKDGEDSVCLSAG 316
Query: 254 VTAPGG----KSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWF 309
+ G K RR RT FTS QL ELE+ F Y + R ++A L L+E +V++WF
Sbjct: 317 SDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWF 376
Query: 310 QNRRAKW-KRIKAGNVSSRSGEPVRNP 335
QNRRAKW KR KAG + G P P
Sbjct: 377 QNRRAKWRKREKAGAQTHPPGLPFPGP 403
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 85.9 bits (211), Expect = 5e-17
Identities = 64/179 (35%), Positives = 79/179 (44%), Gaps = 23/179 (12%)
Query: 161 AEPPPPPPPHFSETFPSL----PAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDD 216
A P P P F + S P + D + SA P+ S +E D
Sbjct: 75 AFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPSASSPSDQATSASSSANFTEID 134
Query: 217 GFLDSSAGGPGALLGPKPKLKGS------LGTGAEEGAP-----------VTAGVTAPGG 259
SS A P L + T A EG ++ +T P G
Sbjct: 135 EASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTPQIFPWMRKLHISHDMTGPDG 194
Query: 260 KSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR 318
K R RTA+T Q LELEKEFH +YL+ R +IAHAL LSE Q+KIWFQNRR KWK+
Sbjct: 195 K--RARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK 251
>gi|4503615 even-skipped homeobox 1 [Homo sapiens]
Length = 407
Score = 85.5 bits (210), Expect = 7e-17
Identities = 67/215 (31%), Positives = 89/215 (41%), Gaps = 17/215 (7%)
Query: 110 EPPDAFYGPQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREK------VAEP 163
EPP+ P+ + A AT R P P GL P E + P
Sbjct: 37 EPPEKMV-PRGCLSPRAVPPATRERGGGGPE-EEPVDGLAGSAAGPGAEPQVAGAAMLGP 94
Query: 164 PPPPPPHFSETFPSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSA 223
PP P S + P+ S E++E S + E S + + S
Sbjct: 95 GPPAPSVDSLSGQGQPSSSDTESDFYEEIEVSCTPDCATGNAEYQHSKGSGSEALVGSPN 154
Query: 224 GGPGALLGPKPKLKGSLGTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCK 283
GG PK G G G +G + + RR RTAFT EQ+ LEKEF+ +
Sbjct: 155 GG-----SETPKSNGGSGGGGSQGTLACSA----SDQMRRYRTAFTREQIARLEKEFYRE 205
Query: 284 KYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR 318
Y+S R ++A AL L E +K+WFQNRR K KR
Sbjct: 206 NYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 240
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 85.1 bits (209), Expect = 9e-17
Identities = 42/72 (58%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 258 GGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWK 317
GG+ +R RTA+T +Q+LELEKEFH +YL+ R +IAH L LSE Q+KIWFQNRR KWK
Sbjct: 151 GGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWK 210
Query: 318 R-IKAGNVSSRS 328
+ K N RS
Sbjct: 211 KDHKLPNTKGRS 222
Score = 28.9 bits (63), Expect = 7.5
Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 15 GGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYP---MFMPYRPLVLPQALAPAPLP 67
GG G GPG+A P GH G P P P P A PAPLP
Sbjct: 63 GGSGPGPGSAL----------PARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLP 108
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 84.3 bits (207), Expect = 2e-16
Identities = 68/194 (35%), Positives = 86/194 (44%), Gaps = 32/194 (16%)
Query: 159 KVAEPPPPPPPHFSETFPSLPAEGKVYSSDE--EKLEA--SAGDPAGSEQEEEGSGGDSE 214
+ A P P P + + GK SS + +LE +AG AG EGS + E
Sbjct: 33 RAALPAVRPAPREARKSLAEVEAGKDASSRDPVRQLETPDAAGPGAGQASPLEGSEAEEE 92
Query: 215 DD------------------GFLDSSAGGPGALLGPKPKLKGSLGTGAEEGAPVTAGVTA 256
+D G S GAL +P G G G P + G
Sbjct: 93 EDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDG--GGGPVRSPPGSPGSPR 150
Query: 257 PG--------GKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIW 308
P K RR RTAFT EQL+ LE +F +YLS+ ER +A +L L+E QVKIW
Sbjct: 151 PRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIW 210
Query: 309 FQNRRAKWKRIKAG 322
FQNRR KWK+ G
Sbjct: 211 FQNRRTKWKKQNPG 224
Score = 43.1 bits (100), Expect = 4e-04
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 2 QRAGGGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQAL 61
Q GG PG GGGGGGG G + P PP +G L + +P + VL +
Sbjct: 230 QVGGGAPQPGAAGGGGGGGSGGS--------PGPPGTGALHFQTFPSYSAAN--VLFPSA 279
Query: 62 APAPLPAGLPPLAPLASFAG 81
A PL A P +P A F G
Sbjct: 280 ASFPLTAAAPG-SPFAPFLG 298
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 84.3 bits (207), Expect = 2e-16
Identities = 96/331 (29%), Positives = 131/331 (39%), Gaps = 39/331 (11%)
Query: 8 SAPGGNGGGGGGGPGTAFSIDSLIGPPP-------PRSGHLLYTGYPMFMPYRPLVLPQA 60
++PG GGGGG GPG GP P PRS + P P Q
Sbjct: 92 ASPGSGGGGGGLGPGAHG-----YGPSPIDLWLDAPRSCRMEPPDGPPPPPQ------QQ 140
Query: 61 LAPAPLPAGLPPLAPLASFAGRLT--NTFCA-GLGQAVPSMVALTTALPSFAE--PPDAF 115
P P P P A SFA + +++C P + A L F PPD
Sbjct: 141 PPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELAPFPRGPPPDGC 200
Query: 116 YGPQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFSETF 175
L ++ R + G + G A++ A P P PP
Sbjct: 201 ----ALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGG----AQQLGAGPFPAQPPGRGFDL 252
Query: 176 PSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSE---DDGFLDSSAGGPGALLGP 232
P A G ++ +E+ S P + GS GD E + + P
Sbjct: 253 PPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKA 312
Query: 233 KPKLKGSLGTGAEEGAPVTAGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERS 292
P+ K SLG E A +TA G R++R +T Q LELEKEF YL+ R
Sbjct: 313 SPE-KDSLGNSKGENA--ANWLTAKSG--RKKRCPYTKHQTLELEKEFLFNMYLTRERRL 367
Query: 293 QIAHALKLSEVQVKIWFQNRRAKWKRIKAGN 323
+I+ ++ L++ QVKIWFQNRR K K++ N
Sbjct: 368 EISRSVHLTDRQVKIWFQNRRMKLKKMNREN 398
>gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens]
Length = 139
Score = 84.3 bits (207), Expect = 2e-16
Identities = 51/122 (41%), Positives = 64/122 (52%), Gaps = 8/122 (6%)
Query: 209 SGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTGAEEGAPVTAGVTAPGGKSRRRRTAF 268
+GG +D G L S+A + + K S G K+R+ RTAF
Sbjct: 12 TGGPGDDYGVLGSTAN--------ETEKKSSRRRKESSDNQENRGKPEGSSKARKERTAF 63
Query: 269 TSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVSSRS 328
T EQL ELE EF YL+ R +IA L LSE QVK+WFQNRR KWKR+K G S +
Sbjct: 64 TKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPN 123
Query: 329 GE 330
G+
Sbjct: 124 GQ 125
>gi|152963644 paired-like homeodomain transcription factor 1 [Homo
sapiens]
Length = 314
Score = 83.6 bits (205), Expect = 3e-16
Identities = 61/175 (34%), Positives = 87/175 (49%), Gaps = 34/175 (19%)
Query: 145 EGGLEADELLPAREKVAEPPPPPPPHFSETFP-SLPAEGKVYSSDEEKLEASAGDPAGSE 203
+GG+ + L + PPPPPP F + PA+ + E LE SA + + +E
Sbjct: 5 KGGMSLERL----PEGLRPPPPPPHDMGPAFHLARPADPR------EPLENSASESSDTE 54
Query: 204 QEEEGSGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTGAEEGAPVTAGVTAPGGKSRR 263
E+ GG E G DS AGG G GA++ A K RR
Sbjct: 55 LPEKERGG--EPKGPEDSGAGGTGC-------------GGADDPAKKK--------KQRR 91
Query: 264 RRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR 318
+RT FTS+QL ELE F +Y ++ R +IA L+E +V++WF+NRRAKW++
Sbjct: 92 QRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVWFKNRRAKWRK 146
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 83.6 bits (205), Expect = 3e-16
Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 12/132 (9%)
Query: 225 GPGALLGPKPKLKG-SLGTGAEEGA-----PVTAGVT-----APGGKSRRRRTAFTSEQL 273
GPGA+ +L G EE + P AG T GG+ ++ RT F+ Q+
Sbjct: 156 GPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGVGGGRKKKTRTVFSRSQV 215
Query: 274 LELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVR 333
+LE F K+YLS ER+ +A +L+L+E QVKIWFQNRR KWKR A + + S P
Sbjct: 216 FQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPG 275
Query: 334 NPKIV-VPIPVH 344
++V VP+ H
Sbjct: 276 AQRLVRVPVLYH 287
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,243,265
Number of Sequences: 37866
Number of extensions: 1424204
Number of successful extensions: 21247
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 939
Number of HSP's that attempted gapping in prelim test: 11861
Number of HSP's gapped (non-prelim): 7252
length of query: 363
length of database: 18,247,518
effective HSP length: 104
effective length of query: 259
effective length of database: 14,309,454
effective search space: 3706148586
effective search space used: 3706148586
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.