Guide to the Human Genome
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Name: NKD2 Sequence: fasta or formatted (451aa) NCBI GI: 14916427
Description:

naked cuticle homolog 2

Referenced in:

Wnt Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         40           4
 C cysteine            1.3          6           1
 D aspartate           5.1         23           2
 E glutamate           8.9         40           2
 F phenylalanine       1.8          8           1
 G glycine             7.5         34           2
 H histidine           7.3         33           9
 I isoleucine          0.9          4           1
 K lysine              5.1         23           1
 L leucine             5.5         25           2
 M methionine          0.9          4           1
 N asparagine          1.8          8           1
 P proline            11.3         51           5
 Q glutamine           5.3         24           1
 R arginine            9.1         41           2
 S serine              7.8         35           2
 T threonine           3.1         14           1
 V valine              5.8         26           2
 W tryptophan          0.2          1           1
 Y tyrosine            2.4         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   naked cuticle homolog 2 
NKD1                  0.310   naked cuticle homolog 1 
FUSSEL18              0.028   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.028   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.028   PREDICTED: functional smad suppressing element 18 [...
POU4F2                0.026   Brn3b POU domain transcription factor 
ARID1B                0.026   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.026   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.026   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
VGLL3                 0.026   colon carcinoma related protein 
MAFA                  0.025   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
IQSEC2                0.025   IQ motif and Sec7 domain 2 isoform1 
C10orf140             0.025   hypothetical protein LOC387640 
FOXG1                 0.024   forkhead box G1 
ONECUT1               0.024   one cut homeobox 1 
RBM33                 0.024   RNA binding motif protein 33 
FOXB2                 0.023   forkhead box B2 
MEOX2                 0.023   mesenchyme homeobox 2 
GAS2L1                0.023   growth arrest-specific 2 like 1 isoform a 
GAS2L1                0.023   growth arrest-specific 2 like 1 isoform a 
SETD1A                0.022   SET domain containing 1A 
NR4A3                 0.022   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.022   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.022   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.022   nuclear receptor subfamily 4, group A, member 3 isof...
DYRK1A                0.022   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.022   dual-specificity tyrosine-(Y)-phosphorylation regula...
LOC100132015          0.022   PREDICTED: similar to testis expressed sequence 13A...
CBX4                  0.021   chromobox homolog 4 
IQSEC1                0.021   IQ motif and Sec7 domain 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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