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Search of human proteins with 148236061
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148236061 hypothetical protein LOC285501 [Homo sapiens]
(109 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148236061 hypothetical protein LOC285501 [Homo sapiens] 225 7e-60
gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens] 51 2e-07
gi|187608508 centromere protein L isoform 1 [Homo sapiens] 50 4e-07
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 49 7e-07
gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens] 48 2e-06
gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens] 48 2e-06
gi|148839316 NIMA-related kinase 4 [Homo sapiens] 47 3e-06
gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens] 47 3e-06
gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo sapi... 45 1e-05
gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo sapi... 45 1e-05
gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens] 45 1e-05
gi|61969666 arginine-fifty homeobox [Homo sapiens] 45 2e-05
gi|6005810 mitogen-activated protein kinase kinase kinase kinase... 44 2e-05
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens] 44 4e-05
gi|122939204 parkin co-regulated gene protein isoform 1 [Homo sa... 43 5e-05
gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens] 41 2e-04
gi|237858664 hypothetical protein LOC123207 isoform b [Homo sapi... 41 2e-04
gi|58294160 breast carcinoma amplified sequence 4 isoform a [Hom... 40 4e-04
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 39 7e-04
gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo ... 38 0.002
gi|34147403 intraflagellar transport 81-like isoform 2 [Homo sap... 38 0.002
gi|94680985 cyclin J-like [Homo sapiens] 38 0.002
gi|239755619 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo ... 37 0.003
gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo ... 37 0.003
gi|40807368 potassium channel regulator isoform 2 [Homo sapiens] 37 0.003
gi|34147532 myosin, light chain 10, regulatory [Homo sapiens] 37 0.004
gi|194363758 signal recognition particle 9kDa isoform 1 [Homo sa... 37 0.004
gi|51477721 testis expressed sequence 11 isoform 1 [Homo sapiens] 36 0.008
gi|170932471 hypothetical protein LOC79703 [Homo sapiens] 36 0.008
>gi|148236061 hypothetical protein LOC285501 [Homo sapiens]
Length = 109
Score = 225 bits (573), Expect = 7e-60
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MKDEVLNLNSQLLYAIWKKVKLECSGPILAHCNLCLLGSRHPSTSASQVAGTTGEKTMRS 60
MKDEVLNLNSQLLYAIWKKVKLECSGPILAHCNLCLLGSRHPSTSASQVAGTTGEKTMRS
Sbjct: 1 MKDEVLNLNSQLLYAIWKKVKLECSGPILAHCNLCLLGSRHPSTSASQVAGTTGEKTMRS 60
Query: 61 ARMMDCHHWGTGKGLSKSMYVFQSLQNVSDSLKYIFSKCQIQALSTVQF 109
ARMMDCHHWGTGKGLSKSMYVFQSLQNVSDSLKYIFSKCQIQALSTVQF
Sbjct: 61 ARMMDCHHWGTGKGLSKSMYVFQSLQNVSDSLKYIFSKCQIQALSTVQF 109
>gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]
Length = 475
Score = 50.8 bits (120), Expect = 2e-07
Identities = 25/34 (73%), Positives = 26/34 (76%)
Query: 21 KLECSGPILAHCNLCLLGSRHPSTSASQVAGTTG 54
+LECSG ILAHCNL L GSR SASQ AGTTG
Sbjct: 431 RLECSGMILAHCNLRLPGSRDSPASASQAAGTTG 464
>gi|187608508 centromere protein L isoform 1 [Homo sapiens]
Length = 390
Score = 50.1 bits (118), Expect = 4e-07
Identities = 27/48 (56%), Positives = 28/48 (58%), Gaps = 10/48 (20%)
Query: 21 KLECSGPILAHCNLCLLGSRHPSTSASQVAGTTGEKTMRSARMMDCHH 68
+LE SG IL CNLCLLGS PST A QVAGT G CHH
Sbjct: 147 RLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGA----------CHH 184
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 49.3 bits (116), Expect = 7e-07
Identities = 22/35 (62%), Positives = 28/35 (80%)
Query: 21 KLECSGPILAHCNLCLLGSRHPSTSASQVAGTTGE 55
+LECSG ++AHC+L LL S +P TSASQVAGT +
Sbjct: 443 RLECSGTVIAHCSLKLLDSSNPPTSASQVAGTADD 477
>gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens]
Length = 600
Score = 47.8 bits (112), Expect = 2e-06
Identities = 26/50 (52%), Positives = 30/50 (60%)
Query: 4 EVLNLNSQLLYAIWKKVKLECSGPILAHCNLCLLGSRHPSTSASQVAGTT 53
E +NL+ + +LE SG ILAHCN LLGS S SASQV GTT
Sbjct: 16 EYMNLSVLEKIGYFSVARLEYSGTILAHCNFRLLGSNDSSASASQVTGTT 65
>gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens]
Length = 619
Score = 47.8 bits (112), Expect = 2e-06
Identities = 26/50 (52%), Positives = 30/50 (60%)
Query: 4 EVLNLNSQLLYAIWKKVKLECSGPILAHCNLCLLGSRHPSTSASQVAGTT 53
E +NL+ + +LE SG ILAHCN LLGS S SASQV GTT
Sbjct: 16 EYMNLSVLEKIGYFSVARLEYSGTILAHCNFRLLGSNDSSASASQVTGTT 65
>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
Length = 841
Score = 47.4 bits (111), Expect = 3e-06
Identities = 27/48 (56%), Positives = 28/48 (58%), Gaps = 10/48 (20%)
Query: 21 KLECSGPILAHCNLCLLGSRHPSTSASQVAGTTGEKTMRSARMMDCHH 68
KLECSG ILAH NL LLGS SAS+VAG TG CHH
Sbjct: 463 KLECSGTILAHSNLRLLGSSDSPASASRVAGITGV----------CHH 500
>gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens]
Length = 629
Score = 47.0 bits (110), Expect = 3e-06
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 21 KLECSGPILAHCNLCLLGSRHPSTSASQVAGTTG 54
+LECS I AHC+L LL S +P TS SQV GTTG
Sbjct: 591 RLECSSTITAHCSLNLLDSSNPPTSTSQVVGTTG 624
>gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo
sapiens]
Length = 312
Score = 45.4 bits (106), Expect = 1e-05
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 17 WKKVKLECSGPILAHCNLCLLGSRHPSTSASQVAGTTGEKT 57
+++ +LEC+G I AHCNL L GS S+S+VAG TG KT
Sbjct: 45 YQQERLECNGTISAHCNLHLPGSSDSPASSSRVAGITGIKT 85
>gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo
sapiens]
Length = 341
Score = 45.4 bits (106), Expect = 1e-05
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 17 WKKVKLECSGPILAHCNLCLLGSRHPSTSASQVAGTTGEKT 57
+++ +LEC+G I AHCNL L GS S+S+VAG TG KT
Sbjct: 45 YQQERLECNGTISAHCNLHLPGSSDSPASSSRVAGITGIKT 85
>gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens]
Length = 148
Score = 45.4 bits (106), Expect = 1e-05
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 21 KLECSGPILAHCNLCLLGSRHPSTSASQVAGTTGEKTMRSARM 63
+LEC+G I AHC LCL S TS S+V GTTG + A++
Sbjct: 78 RLECTGAISAHCKLCLSDSSDSPTSPSRVGGTTGHRCSELAQI 120
>gi|61969666 arginine-fifty homeobox [Homo sapiens]
Length = 315
Score = 44.7 bits (104), Expect = 2e-05
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 21 KLECSGPILAHCNLCLLGSRHPSTSASQVAGTTGEKTMRSARMMDCH 67
KLECSG + A+C+L L GS P TSAS+VA TT + R H
Sbjct: 41 KLECSGTVSAYCSLNLPGSTDPPTSASRVAATTAIRRRHKERTSFTH 87
>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
isoform 2 [Homo sapiens]
Length = 833
Score = 44.3 bits (103), Expect = 2e-05
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 12 LLYAIWKKVKLECSGPILAHCNLCLLGSRHPSTSASQVAGTTG 54
L + + +LECSG I HCNL L GS + SAS+VAG TG
Sbjct: 790 LTFRLLGSPRLECSGTISPHCNLLLPGSSNSPASASRVAGITG 832
>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
Length = 638
Score = 43.5 bits (101), Expect = 4e-05
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 21 KLECSGPILAHCNLCLLGSRHPSTSASQVAGTT 53
+LECSG I AHC+L L GS SASQ+AGTT
Sbjct: 8 RLECSGAISAHCSLHLPGSSDSPASASQIAGTT 40
>gi|122939204 parkin co-regulated gene protein isoform 1 [Homo
sapiens]
Length = 296
Score = 43.1 bits (100), Expect = 5e-05
Identities = 21/30 (70%), Positives = 23/30 (76%)
Query: 21 KLECSGPILAHCNLCLLGSRHPSTSASQVA 50
+LECSG I+A CNL LGS P TSASQVA
Sbjct: 211 RLECSGAIMARCNLDHLGSSDPPTSASQVA 240
>gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]
Length = 135
Score = 41.2 bits (95), Expect = 2e-04
Identities = 19/27 (70%), Positives = 20/27 (74%)
Query: 21 KLECSGPILAHCNLCLLGSRHPSTSAS 47
+LECSG ILAHCNLCLLGS AS
Sbjct: 109 RLECSGVILAHCNLCLLGSSDSLALAS 135
>gi|237858664 hypothetical protein LOC123207 isoform b [Homo
sapiens]
Length = 167
Score = 41.2 bits (95), Expect = 2e-04
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 21 KLECSGPILAHCNLCLLGSRHPSTSAS 47
KLECSG +LAHCNL LLGS + SAS
Sbjct: 141 KLECSGVVLAHCNLHLLGSSYSPASAS 167
>gi|58294160 breast carcinoma amplified sequence 4 isoform a [Homo
sapiens]
Length = 211
Score = 40.0 bits (92), Expect = 4e-04
Identities = 25/47 (53%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 22 LECSGPILAHCNLCLLGSRHPSTSASQVAGTTGEKTMRSARMMDCHH 68
+ECSG I A CNL L GS SASQVAG T E T AR + H
Sbjct: 164 VECSGTIPARCNLRLPGSSDSPASASQVAGIT-EVTCTGARDVRAAH 209
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 39.3 bits (90), Expect = 7e-04
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 22 LECSGPILAHCNLCLLGSRHPSTSASQVAGTTGEKTMRSARMMDCHHWGTGKGLSKSMYV 81
L CS I AHCN L GS SASQV G TG CHH + + +
Sbjct: 1106 LGCSSAISAHCNFRLPGSSDFPASASQVDGITGA----------CHHTQPSEKIRIEIIA 1155
Query: 82 F---QSLQNVSDSLKYIFSKCQIQAL 104
S + D+++ +F +C+ +L
Sbjct: 1156 LSLNDSQVTMDDTIQRLFVECRFYSL 1181
>gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo
sapiens]
Length = 511
Score = 37.7 bits (86), Expect = 0.002
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 14 YAIWKK------VKLECSGPILAHCNLCLLGSRHPSTSASQVAG 51
+A+W + +LECSG I AHCN L GS + AS+VAG
Sbjct: 130 HAVWGRWNLALSPRLECSGKISAHCNPHLQGSSNSPAQASRVAG 173
>gi|34147403 intraflagellar transport 81-like isoform 2 [Homo
sapiens]
Length = 431
Score = 37.7 bits (86), Expect = 0.002
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 21 KLECSGPILAHCNLCLLGSRHPSTSAS 47
+LEC G I+A+C+L LLGS P TSAS
Sbjct: 405 RLECGGVIMAYCSLKLLGSSDPPTSAS 431
>gi|94680985 cyclin J-like [Homo sapiens]
Length = 435
Score = 37.7 bits (86), Expect = 0.002
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Query: 21 KLECSGPILAHCNLCLLGSR-------HPSTSASQVAGTTGE 55
+L+CSG I AHCNL L GS HP + QVA TTG+
Sbjct: 102 RLKCSGMISAHCNLHLPGSSNSPASAPHPPPTPPQVAETTGK 143
>gi|239755619 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 37.4 bits (85), Expect = 0.003
Identities = 20/31 (64%), Positives = 21/31 (67%)
Query: 21 KLECSGPILAHCNLCLLGSRHPSTSASQVAG 51
+LE SG I A CNL LLGS SASQVAG
Sbjct: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAG 43
>gi|239750132 PREDICTED: hypothetical protein XP_002347267 [Homo
sapiens]
Length = 261
Score = 37.4 bits (85), Expect = 0.003
Identities = 20/31 (64%), Positives = 21/31 (67%)
Query: 21 KLECSGPILAHCNLCLLGSRHPSTSASQVAG 51
+LE SG I A CNL LLGS SASQVAG
Sbjct: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAG 43
>gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo
sapiens]
Length = 261
Score = 37.4 bits (85), Expect = 0.003
Identities = 20/31 (64%), Positives = 21/31 (67%)
Query: 21 KLECSGPILAHCNLCLLGSRHPSTSASQVAG 51
+LE SG I A CNL LLGS SASQVAG
Sbjct: 13 RLEFSGTISARCNLRLLGSSDSPASASQVAG 43
>gi|40807368 potassium channel regulator isoform 2 [Homo sapiens]
Length = 229
Score = 37.4 bits (85), Expect = 0.003
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 20 VKLECSGPILAHCNLCLLGSRHPSTSASQVAGTTG 54
V+L C+G I AH NL L GS SAS+VAG TG
Sbjct: 192 VRLVCNGVISAHHNLRLWGSSDSPASASRVAGITG 226
>gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]
Length = 226
Score = 36.6 bits (83), Expect = 0.004
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 21 KLECSGPILAHCNLCLLGSRHPSTSASQ 48
+LE +G I AHCNLCL GS + SASQ
Sbjct: 64 RLERNGMISAHCNLCLTGSSNSPASASQ 91
>gi|194363758 signal recognition particle 9kDa isoform 1 [Homo
sapiens]
Length = 82
Score = 36.6 bits (83), Expect = 0.004
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 20 VKLECSGPILAHCNLCLLGSRHPSTSAS 47
++L+CSG I+AHC L LLGS P SAS
Sbjct: 55 LRLQCSGMIIAHCILDLLGSSGPLASAS 82
>gi|51477721 testis expressed sequence 11 isoform 1 [Homo sapiens]
Length = 940
Score = 35.8 bits (81), Expect = 0.008
Identities = 19/26 (73%), Positives = 19/26 (73%)
Query: 28 ILAHCNLCLLGSRHPSTSASQVAGTT 53
I AHCNL LL S S SASQVAGTT
Sbjct: 2 ISAHCNLRLLCSSDSSASASQVAGTT 27
>gi|170932471 hypothetical protein LOC79703 [Homo sapiens]
Length = 677
Score = 35.8 bits (81), Expect = 0.008
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 23 ECSGPILAHCNLCLLGSRHPSTSASQVAGTT 53
ECSG + AHCNL L GS S +VAG T
Sbjct: 116 ECSGAVSAHCNLHLPGSSDSHASVPRVAGIT 146
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.129 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,701,161
Number of Sequences: 37866
Number of extensions: 130575
Number of successful extensions: 497
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 75
length of query: 109
length of database: 18,247,518
effective HSP length: 79
effective length of query: 30
effective length of database: 15,256,104
effective search space: 457683120
effective search space used: 457683120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.