IFT20 24690

Name: IFT20	Sequence: fasta or formatted (148aa)		NCBI GI: 28372523
Description: intraflagellar transport protein IFT20		Referenced in: Additional Structural Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.8 13 2 C cysteine 3.4 5 1 D aspartate 5.4 8 1 E glutamate 9.5 14 2 F phenylalanine 2.0 3 1 G glycine 6.8 10 2 H histidine 2.0 3 1 I isoleucine 4.7 7 1 K lysine 8.8 13 1 L leucine 9.5 14 1 M methionine 1.4 2 1 N asparagine 2.7 4 1 P proline 3.4 5 1 Q glutamine 4.1 6 2 R arginine 4.7 7 1 S serine 11.5 17 2 T threonine 5.4 8 2 V valine 5.4 8 1 W tryptophan 0.0 0 0 Y tyrosine 0.7 1 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 intraflagellar transport protein IFT20 SORBS1 0.112 sorbin and SH3 domain containing 1 isoform 4 NEK4 0.109 NIMA-related kinase 4 MAP4K1 0.109 mitogen-activated protein kinase kinase kinase kinase... FAM76A 0.101 hypothetical protein LOC199870 isoform 2 FAM76A 0.101 hypothetical protein LOC199870 isoform 1 NOS3 0.101 nitric oxide synthase 3 isoform 4 ZMAT1 0.097 zinc finger, matrin type 1 isoform 1 MYL10 0.090 myosin, light chain 10, regulatory SLC36A3 0.090 solute carrier family 36, member 3 isoform 1 RPGRIP1L 0.086 RPGRIP1-like isoform a C11orf80 0.079 hypothetical protein LOC79703 NXNL2 0.079 nucleoredoxin-like 2 isoform 2 ADRA1A 0.079 alpha-1A-adrenergic receptor isoform 2 LOC285501 0.075 hypothetical protein LOC285501 ARGFX 0.075 arginine-fifty homeobox CCNJL 0.071 cyclin J-like LOC100289388 0.067 PREDICTED: hypothetical protein XP_002343124 BCAS4 0.067 breast carcinoma amplified sequence 4 isoform a [Hom... IFT81 0.067 intraflagellar transport 81-like isoform 2 CNGA1 0.064 cyclic nucleotide gated channel alpha 1 isoform 1 [... C20orf30 0.064 hypothetical protein LOC29058 isoform 1 LOC100293423 0.064 PREDICTED: hypothetical protein LOC100290837 0.064 PREDICTED: hypothetical protein XP_002347267 KCNRG 0.064 potassium channel regulator isoform 2 TCEANC 0.064 TFIIS central domain-containing protein 1 C15orf40 0.064 hypothetical protein LOC123207 isoform b IL12RB1 0.064 interleukin 12 receptor, beta 1 isoform 2 precursor ... CENPL 0.060 centromere protein L isoform 1 PACRG 0.052 parkin co-regulated gene protein isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.