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Search of human proteins with 14165464
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14165464 polypyrimidine tract-binding protein 1 isoform b
[Homo sapiens]
(550 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Ho... 1080 0.0
gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Hom... 1073 0.0
gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Ho... 1030 0.0
gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens] 816 0.0
gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens] 780 0.0
gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Ho... 371 e-103
gi|217416379 heterogeneous nuclear ribonucleoprotein L-like isof... 171 2e-42
gi|20149709 heterogeneous nuclear ribonucleoprotein L-like isofo... 171 2e-42
gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ... 160 4e-39
gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b ... 142 8e-34
gi|197276594 RNA binding motif protein 20 [Homo sapiens] 79 1e-14
gi|62750354 matrin 3 [Homo sapiens] 55 2e-07
gi|21626466 matrin 3 [Homo sapiens] 55 2e-07
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 51 3e-06
gi|13899354 RNA binding motif protein 4B [Homo sapiens] 50 4e-06
gi|93277122 RNA binding motif protein 4 [Homo sapiens] 50 5e-06
gi|224028246 non-POU domain containing, octamer-binding isoform ... 49 9e-06
gi|224028244 non-POU domain containing, octamer-binding isoform ... 49 9e-06
gi|34932414 non-POU domain containing, octamer-binding isoform 1... 49 9e-06
gi|38149981 small nuclear ribonucleoprotein polypeptide B'' [Hom... 48 2e-05
gi|4507123 small nuclear ribonucleoprotein polypeptide B'' [Homo... 48 2e-05
gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo s... 48 3e-05
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 47 3e-05
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 47 3e-05
gi|62526045 zinc finger protein 638 [Homo sapiens] 47 6e-05
gi|21626468 zinc finger protein 638 [Homo sapiens] 47 6e-05
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 45 2e-04
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 45 2e-04
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 45 2e-04
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 45 2e-04
>gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Homo
sapiens]
Length = 550
Score = 1080 bits (2794), Expect = 0.0
Identities = 550/550 (100%), Positives = 550/550 (100%)
Query: 1 MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRV 60
MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRV
Sbjct: 1 MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRV 60
Query: 61 IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV 120
IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV
Sbjct: 61 IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV 120
Query: 121 LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQ 180
LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQ
Sbjct: 121 LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQ 180
Query: 181 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS
Sbjct: 181 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
Query: 241 LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFASP 300
LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFASP
Sbjct: 241 LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFASP 300
Query: 301 YAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLV 360
YAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLV
Sbjct: 301 YAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLV 360
Query: 361 SNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG 420
SNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG
Sbjct: 361 SNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG 420
Query: 421 KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI 480
KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI
Sbjct: 421 KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI 480
Query: 481 PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHH 540
PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHH
Sbjct: 481 PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHH 540
Query: 541 LRVSFSKSTI 550
LRVSFSKSTI
Sbjct: 541 LRVSFSKSTI 550
>gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Homo
sapiens]
Length = 557
Score = 1073 bits (2776), Expect = 0.0
Identities = 550/557 (98%), Positives = 550/557 (98%), Gaps = 7/557 (1%)
Query: 1 MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRV 60
MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRV
Sbjct: 1 MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRV 60
Query: 61 IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV 120
IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV
Sbjct: 61 IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV 120
Query: 121 LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQ 180
LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQ
Sbjct: 121 LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQ 180
Query: 181 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS
Sbjct: 181 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
Query: 241 LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAF--- 297
LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAF
Sbjct: 241 LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAP 300
Query: 298 ----ASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGA 353
ASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGA
Sbjct: 301 GIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGA 360
Query: 354 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHL 413
GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHL
Sbjct: 361 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHL 420
Query: 414 NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA 473
NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA
Sbjct: 421 NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA 480
Query: 474 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNH 533
TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNH
Sbjct: 481 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNH 540
Query: 534 DLGENHHLRVSFSKSTI 550
DLGENHHLRVSFSKSTI
Sbjct: 541 DLGENHHLRVSFSKSTI 557
>gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Homo
sapiens]
Length = 531
Score = 1030 bits (2663), Expect = 0.0
Identities = 531/550 (96%), Positives = 531/550 (96%), Gaps = 19/550 (3%)
Query: 1 MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRV 60
MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRV
Sbjct: 1 MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRV 60
Query: 61 IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV 120
IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV
Sbjct: 61 IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV 120
Query: 121 LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQ 180
LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQ
Sbjct: 121 LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQ 180
Query: 181 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS
Sbjct: 181 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
Query: 241 LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFASP 300
LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAF
Sbjct: 241 LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAF--- 297
Query: 301 YAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLV 360
GLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLV
Sbjct: 298 ----------------GLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLV 341
Query: 361 SNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG 420
SNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG
Sbjct: 342 SNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG 401
Query: 421 KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI 480
KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI
Sbjct: 402 KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI 461
Query: 481 PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHH 540
PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHH
Sbjct: 462 PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHH 521
Query: 541 LRVSFSKSTI 550
LRVSFSKSTI
Sbjct: 522 LRVSFSKSTI 531
>gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens]
Length = 552
Score = 816 bits (2108), Expect = 0.0
Identities = 423/559 (75%), Positives = 476/559 (85%), Gaps = 16/559 (2%)
Query: 1 MDGIVPD-IAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSR 59
MDG+V D I VG KRGSDEL S+ + NGPF M+S++ S ANGNDSKKFK D R PSR
Sbjct: 1 MDGVVTDLITVGLKRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRD-RPPCSPSR 59
Query: 60 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTP 119
V+H+RK+P DVTE E+ISLGLPFGKVTNLLMLKGK+QAF+EM +EEAA TMVNYYT +TP
Sbjct: 60 VLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITP 119
Query: 120 VLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAG 179
LR QP+YIQ+SNH+ELKTD+ PNQARAQAALQAV++VQSG+LAL+ + + G + G
Sbjct: 120 HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPS--NEGTVLPG 177
Query: 180 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 239
QSPVLRII+ENLFYPVTL+VLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV+A +AK+
Sbjct: 178 QSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKM 237
Query: 240 SLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAF-- 297
+LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRD+TR DLP+GD QPSL+ MAAAF
Sbjct: 238 ALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGA 297
Query: 298 ----ASPYAGA-GFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAG 352
+SPYAGA GF P PQA GLSVP V GAL PL I S+A GR+AIPG +G
Sbjct: 298 PGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVT----GRMAIPGASG 353
Query: 353 A-GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMS 411
GNSVLLV+NLNP+ +TP LFILFGVYGDV RVKI+FNKKENALVQMAD NQAQLAM+
Sbjct: 354 IPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMN 413
Query: 412 HLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPP 471
HL+G +L+GK +R TLSKHQ VQLPREGQEDQGLTKD+ NSPLHRFKKPGSKNFQNIFPP
Sbjct: 414 HLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPP 473
Query: 472 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLH 531
SATLHLSNIPPSV+ +DLK LF G VK FKFFQKDRKMALIQ+GSVEEA+QALI+LH
Sbjct: 474 SATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELH 533
Query: 532 NHDLGENHHLRVSFSKSTI 550
NHDLGENHHLRVSFSKSTI
Sbjct: 534 NHDLGENHHLRVSFSKSTI 552
>gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens]
Length = 531
Score = 780 bits (2013), Expect = 0.0
Identities = 403/552 (73%), Positives = 461/552 (83%), Gaps = 23/552 (4%)
Query: 1 MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRV 60
MDGIV ++AVG KRGSDEL S V + P S+ ANGNDSKKFKG+ + G PSRV
Sbjct: 1 MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSKKFKGEDKMDGAPSRV 60
Query: 61 IHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV 120
+HIRKLP +VTE EVI+LGLPFGKVTN+LMLKGKNQAF+E+ TEEAA TMVNYY++VTP
Sbjct: 61 LHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPH 120
Query: 121 LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQ 180
LR QPIYIQ+SNHKELKTD++ NQ RAQA LQAV +VQ+ N L S V Q
Sbjct: 121 LRNQPIYIQYSNHKELKTDNTLNQ-RAQAVLQAVTAVQTANTPL--SGTTVSESAVTPAQ 177
Query: 181 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 240
SPVLRII++N++YPVTLDVLHQIFSKFG VLKIITFTKNNQFQALLQY DPV+AQ AKL+
Sbjct: 178 SPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLA 237
Query: 241 LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFASP 300
LDGQNIYNACCTLRIDFSKL +LNVKYNNDKSRDYTRPDLPSGD QP+LD +AAAFA
Sbjct: 238 LDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAK- 296
Query: 301 YAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAA--GRIAIPGLAGAGNSVL 358
+ + L+VP GAL+PLAIP+AAAAAAAA GR+ +PG++ GN+VL
Sbjct: 297 -------------ETSLLAVP---GALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVL 340
Query: 359 LVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKL 418
LVSNLN E VTPQSLF LFGVYGDVQRVKIL+NKK++AL+QMADGNQ+QLAM+HLNG K+
Sbjct: 341 LVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKM 400
Query: 419 HGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLS 478
+GK IR+TLSKHQ VQLPREG +DQGLTKD+GNSPLHRFKKPGSKNFQNIFPPSATLHLS
Sbjct: 401 YGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLS 460
Query: 479 NIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGEN 538
NIPPSV+EEDL+ LF++ GG VK FKFFQ D KMAL+QM +VEEA+QALIDLHN++LGEN
Sbjct: 461 NIPPSVAEEDLRTLFANTGGTVKAFKFFQ-DHKMALLQMATVEEAIQALIDLHNYNLGEN 519
Query: 539 HHLRVSFSKSTI 550
HHLRVSFSKSTI
Sbjct: 520 HHLRVSFSKSTI 531
>gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Homo
sapiens]
Length = 197
Score = 371 bits (953), Expect = e-103
Identities = 184/185 (99%), Positives = 185/185 (100%)
Query: 366 ERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 425
+RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI
Sbjct: 13 KRVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 72
Query: 426 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 485
TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS
Sbjct: 73 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 132
Query: 486 EEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 545
EEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF
Sbjct: 133 EEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 192
Query: 546 SKSTI 550
SKSTI
Sbjct: 193 SKSTI 197
Score = 32.0 bits (71), Expect = 1.5
Identities = 14/14 (100%), Positives = 14/14 (100%)
Query: 1 MDGIVPDIAVGTKR 14
MDGIVPDIAVGTKR
Sbjct: 1 MDGIVPDIAVGTKR 14
>gi|217416379 heterogeneous nuclear ribonucleoprotein L-like isoform
2 [Homo sapiens]
Length = 537
Score = 171 bits (433), Expect = 2e-42
Identities = 135/509 (26%), Positives = 238/509 (46%), Gaps = 60/509 (11%)
Query: 58 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSV 117
S V+H+R L V E +++ FG + ++M+ K QA +E ++A V +
Sbjct: 70 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 129
Query: 118 TPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAM 177
+ GQ + +S K + + +
Sbjct: 130 PVYIAGQQAFFNYSTSKRITRPGNTDDP-------------------------------- 157
Query: 178 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA 237
+G + VL + ++N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ A
Sbjct: 158 SGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKA 216
Query: 238 KLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGD-SQPSLDQTMAAA 296
K +L+G +IY CCTL+I++++ T LNV N++ S DYT+P L D + Q +
Sbjct: 217 KAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGE 276
Query: 297 FASPYAGAGF---PPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGA 353
S + G+ P +P + + L +P A+++ G
Sbjct: 277 HPSSFRHDGYGSHGPLLPLPSRYRMGSRDT-PELVAYPLPQASSSYMHGG--------NP 327
Query: 354 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHL 413
SV++VS L+ ++ +F LF +YG++++VK + ALV+M D + A++HL
Sbjct: 328 SGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHL 387
Query: 414 NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLT--KDYGNSPLHRFKKPGSKNFQNIFPP 471
N KL GK + + +SK +V + + + G + KD+ S +RF G + I PP
Sbjct: 388 NNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPP 447
Query: 472 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK------MALIQMGSVEEAVQ 525
S LH N+P V+EE L + + V+ K+ D K L++ +AV+
Sbjct: 448 SCVLHYYNVPLCVTEETFTKLCNDH-EVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVE 506
Query: 526 ALIDLHNHDL----GEN-HHLRVSFSKST 549
AL L+++ + G N + L++ FS S+
Sbjct: 507 ALTALNHYQIRVPNGSNPYTLKLCFSTSS 535
>gi|20149709 heterogeneous nuclear ribonucleoprotein L-like isoform
1 [Homo sapiens]
Length = 542
Score = 171 bits (433), Expect = 2e-42
Identities = 135/509 (26%), Positives = 238/509 (46%), Gaps = 60/509 (11%)
Query: 58 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSV 117
S V+H+R L V E +++ FG + ++M+ K QA +E ++A V +
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
Query: 118 TPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAM 177
+ GQ + +S K + + +
Sbjct: 135 PVYIAGQQAFFNYSTSKRITRPGNTDDP-------------------------------- 162
Query: 178 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA 237
+G + VL + ++N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ A
Sbjct: 163 SGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKA 221
Query: 238 KLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGD-SQPSLDQTMAAA 296
K +L+G +IY CCTL+I++++ T LNV N++ S DYT+P L D + Q +
Sbjct: 222 KAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGE 281
Query: 297 FASPYAGAGF---PPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGA 353
S + G+ P +P + + L +P A+++ G
Sbjct: 282 HPSSFRHDGYGSHGPLLPLPSRYRMGSRDT-PELVAYPLPQASSSYMHGG--------NP 332
Query: 354 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHL 413
SV++VS L+ ++ +F LF +YG++++VK + ALV+M D + A++HL
Sbjct: 333 SGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHL 392
Query: 414 NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLT--KDYGNSPLHRFKKPGSKNFQNIFPP 471
N KL GK + + +SK +V + + + G + KD+ S +RF G + I PP
Sbjct: 393 NNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPP 452
Query: 472 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK------MALIQMGSVEEAVQ 525
S LH N+P V+EE L + + V+ K+ D K L++ +AV+
Sbjct: 453 SCVLHYYNVPLCVTEETFTKLCNDH-EVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVE 511
Query: 526 ALIDLHNHDL----GEN-HHLRVSFSKST 549
AL L+++ + G N + L++ FS S+
Sbjct: 512 ALTALNHYQIRVPNGSNPYTLKLCFSTSS 540
>gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
[Homo sapiens]
Length = 589
Score = 160 bits (404), Expect = 4e-39
Identities = 143/533 (26%), Positives = 236/533 (44%), Gaps = 77/533 (14%)
Query: 35 SASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK 94
+ +A G + + ++ P V+HIR L V E +++ FG ++ ++++ K
Sbjct: 80 AGAAGGGGGGENYDDPHKTPASP--VVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK 137
Query: 95 NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAV 154
QA +E A VNY + G P ++ +S +++ + +R +V
Sbjct: 138 RQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR------SV 191
Query: 155 NSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKII 214
NS VL + N Y +T DVL+ I + G V +I+
Sbjct: 192 NS--------------------------VLLFTILNPIYSITTDVLYTICNPCGPVQRIV 225
Query: 215 TFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRD 274
F KN QA++++ SAQ AK SL+G +IY+ CCTL+I+++K T LNV N+ + D
Sbjct: 226 IFRKNG-VQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWD 284
Query: 275 YTRPDLP-SGD---------SQPSLDQTMAAAFASPYA---------GAGFPPTFAIPQA 315
YT P+L GD QP L A + P+ G G PP +
Sbjct: 285 YTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRR 344
Query: 316 AGLSV------PNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVT 369
G V P+ +G P G A + VL+V L+ ++
Sbjct: 345 MGPPVGGHRRGPSRYG--PQYGHPPPPPPPPEYG-------PHADSPVLMVYGLDQSKMN 395
Query: 370 PQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 429
+F +F +YG+V++VK + +K A+V+MADG A++HLN + + G+ + + +SK
Sbjct: 396 CDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSK 455
Query: 430 HQNVQLPRE--GQEDQGLT-KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSE 486
Q +P + G ED + KD+ S +RF P I PS LH N P V+E
Sbjct: 456 -QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTE 514
Query: 487 EDLKVLFSSNG----GVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL 535
E+ + G VK F + L++ S +A++ L L+++ +
Sbjct: 515 ENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQM 567
Score = 30.8 bits (68), Expect = 3.4
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 2 DGIVPDIAVGTKRGSDELF----STCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV- 56
DG D A+ T ++ +F + CV+ P IM S +G+ S K +SR+
Sbjct: 428 DGYAVDRAI-THLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFS 486
Query: 57 ------------PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTE 104
PS V+H P++VTE F ++ + L +K + +
Sbjct: 487 TPEQAAKNRIQHPSNVLHFFNAPLEVTEEN-------FFEICDELGVKRPSSVKVFSGKS 539
Query: 105 EAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSP 142
E +++ + + S + L + F NH ++K + P
Sbjct: 540 ERSSSGLLEWESKSDALE----TLGFLNHYQMKNPNGP 573
>gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b
[Homo sapiens]
Length = 456
Score = 142 bits (358), Expect = 8e-34
Identities = 131/474 (27%), Positives = 208/474 (43%), Gaps = 75/474 (15%)
Query: 94 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQA 153
K QA +E A VNY + G P ++ +S +++ + +R +
Sbjct: 4 KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR------S 57
Query: 154 VNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKI 213
VNS VL + N Y +T DVL+ I + G V +I
Sbjct: 58 VNS--------------------------VLLFTILNPIYSITTDVLYTICNPCGPVQRI 91
Query: 214 ITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSR 273
+ F KN QA++++ SAQ AK SL+G +IY+ CCTL+I+++K T LNV N+ +
Sbjct: 92 VIFRKNG-VQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTW 150
Query: 274 DYTRPDLP-SGD---------SQPSLDQTMAAAFASPYA---------GAGFPPTFAIPQ 314
DYT P+L GD QP L A + P+ G G PP +
Sbjct: 151 DYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR 210
Query: 315 AAGLSV------PNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERV 368
G V P+ +G P G A + VL+V L+ ++
Sbjct: 211 RMGPPVGGHRRGPSRYG--PQYGHPPPPPPPPEYG-------PHADSPVLMVYGLDQSKM 261
Query: 369 TPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 428
+F +F +YG+V++VK + +K A+V+MADG A++HLN + + G+ + + +S
Sbjct: 262 NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVS 321
Query: 429 KHQNVQLPRE--GQEDQGLT-KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS 485
K Q +P + G ED + KD+ S +RF P I PS LH N P V+
Sbjct: 322 K-QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVT 380
Query: 486 EEDLKVLFSSNG----GVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL 535
EE+ + G VK F + L++ S +A++ L L+++ +
Sbjct: 381 EENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQM 434
Score = 30.8 bits (68), Expect = 3.4
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 2 DGIVPDIAVGTKRGSDELF----STCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV- 56
DG D A+ T ++ +F + CV+ P IM S +G+ S K +SR+
Sbjct: 295 DGYAVDRAI-THLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFS 353
Query: 57 ------------PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTE 104
PS V+H P++VTE F ++ + L +K + +
Sbjct: 354 TPEQAAKNRIQHPSNVLHFFNAPLEVTEEN-------FFEICDELGVKRPSSVKVFSGKS 406
Query: 105 EAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSP 142
E +++ + + S + L + F NH ++K + P
Sbjct: 407 ERSSSGLLEWESKSDALE----TLGFLNHYQMKNPNGP 440
>gi|197276594 RNA binding motif protein 20 [Homo sapiens]
Length = 1227
Score = 78.6 bits (192), Expect = 1e-14
Identities = 47/100 (47%), Positives = 65/100 (65%), Gaps = 4/100 (4%)
Query: 59 RVIHIRKLPI-DVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSV 117
RV+HI LP TE +VI+LGLPFGKVTN +++K NQAF+EM EAA MV YY
Sbjct: 518 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEMAYTEAAQAMVQYYQEK 577
Query: 118 TPVLRGQPIYIQFS-NHKELKTDSSPNQARAQAALQAVNS 156
+ V+ G+ + I+ S +KEL+ P +A A A +Q ++S
Sbjct: 578 SAVINGEKLLIRMSKRYKELQL-KKPGKAVA-AIIQDIHS 615
>gi|62750354 matrin 3 [Homo sapiens]
Length = 847
Score = 55.1 bits (131), Expect = 2e-07
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 12/125 (9%)
Query: 27 GPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEG-----EVISLGLP 81
GP + + A NGN + + SRV+HI +D G +++ L P
Sbjct: 367 GPAVGPRGNLGAGNGNLQGP-RHMQKGRVETSRVVHI----MDFQRGKNLRYQLLQLVEP 421
Query: 82 FGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS-NHKEL-KTD 139
FG ++N L+L N+AFIEM T E A V+YYT+ ++ G+P+ + S +K + K +
Sbjct: 422 FGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKKPE 481
Query: 140 SSPNQ 144
P+Q
Sbjct: 482 GKPDQ 486
Score = 51.6 bits (122), Expect = 2e-06
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 44 SKKFKGDSRSAGVPS----------RVIHIRKLPID-VTEGEVISLGLPFGKVTNLLMLK 92
S+K+K + G P RVIH+ LP ++ V+ L P+GK+ N ++++
Sbjct: 471 SQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR 530
Query: 93 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQ 144
K+QAFIEM T E A MV++ +G+ + + S + PN+
Sbjct: 531 MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLVLRIPNR 582
Score = 39.7 bits (91), Expect = 0.007
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 26/145 (17%)
Query: 388 ILFNKKENALVQMADGNQAQLAMSHLNGHK--LHGKPIRITLS-KHQNVQLPREGQEDQG 444
++ NK A ++MA AQ A+ + + GKP+R+ LS K++ ++ P EG+ DQ
Sbjct: 429 LILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKKP-EGKPDQ- 486
Query: 445 LTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 504
F +HLSN+P S + + + G +K +
Sbjct: 487 -------------------KFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNY- 526
Query: 505 FFQKDRKMALIQMGSVEEAVQALID 529
+ + A I+M + E+A+ A++D
Sbjct: 527 ILMRMKSQAFIEMETREDAM-AMVD 550
>gi|21626466 matrin 3 [Homo sapiens]
Length = 847
Score = 55.1 bits (131), Expect = 2e-07
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 12/125 (9%)
Query: 27 GPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEG-----EVISLGLP 81
GP + + A NGN + + SRV+HI +D G +++ L P
Sbjct: 367 GPAVGPRGNLGAGNGNLQGP-RHMQKGRVETSRVVHI----MDFQRGKNLRYQLLQLVEP 421
Query: 82 FGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS-NHKEL-KTD 139
FG ++N L+L N+AFIEM T E A V+YYT+ ++ G+P+ + S +K + K +
Sbjct: 422 FGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKKPE 481
Query: 140 SSPNQ 144
P+Q
Sbjct: 482 GKPDQ 486
Score = 51.6 bits (122), Expect = 2e-06
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 44 SKKFKGDSRSAGVPS----------RVIHIRKLPID-VTEGEVISLGLPFGKVTNLLMLK 92
S+K+K + G P RVIH+ LP ++ V+ L P+GK+ N ++++
Sbjct: 471 SQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR 530
Query: 93 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQ 144
K+QAFIEM T E A MV++ +G+ + + S + PN+
Sbjct: 531 MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLVLRIPNR 582
Score = 39.7 bits (91), Expect = 0.007
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 26/145 (17%)
Query: 388 ILFNKKENALVQMADGNQAQLAMSHLNGHK--LHGKPIRITLS-KHQNVQLPREGQEDQG 444
++ NK A ++MA AQ A+ + + GKP+R+ LS K++ ++ P EG+ DQ
Sbjct: 429 LILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKKP-EGKPDQ- 486
Query: 445 LTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 504
F +HLSN+P S + + + G +K +
Sbjct: 487 -------------------KFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNY- 526
Query: 505 FFQKDRKMALIQMGSVEEAVQALID 529
+ + A I+M + E+A+ A++D
Sbjct: 527 ILMRMKSQAFIEMETREDAM-AMVD 550
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 50.8 bits (120), Expect = 3e-06
Identities = 88/423 (20%), Positives = 165/423 (39%), Gaps = 73/423 (17%)
Query: 24 VTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFG 83
V+NGP +SN S+ N N + + + + +I + LP ++T+ E SL G
Sbjct: 12 VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLI-VNYLPQNMTQEEFRSLFGSIG 70
Query: 84 KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPN 143
++ + +++ K + GQ + F N+ + K
Sbjct: 71 EIESCKLVRDK--------------------------ITGQSLGYGFVNYIDPKD----- 99
Query: 144 QARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQI 203
A+ A+ +N L L V + + V L +T L Q+
Sbjct: 100 ---AEKAINTLN-----GLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQL 151
Query: 204 FSKFGTVLK----IITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 259
FS++G ++ + T ++ +++ + A+ A L+GQ A + + F+
Sbjct: 152 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 211
Query: 260 LTS------LNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFASPYAGAGFPPTFAIP 313
S L + +R Y P L + LD + A+ +G P A P
Sbjct: 212 NPSQKSSQALLSQLYQSPNRRYPGP-LHHQAQRFRLDNLLNMAYGVKRLMSGPVPPSACP 270
Query: 314 QAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSL 373
+P+ I + + IPG G G + V NL+P+ L
Sbjct: 271 P-----------RFSPITIDGMTSLVG----MNIPGHTGTG-WCIFVYNLSPDS-DESVL 313
Query: 374 FILFGVYGDVQRVKIL--FNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 428
+ LFG +G V VK++ FN K V M + ++A +A++ LNG++L + ++++
Sbjct: 314 WQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 373
Query: 429 KHQ 431
++
Sbjct: 374 TNK 376
Score = 42.7 bits (99), Expect = 9e-04
Identities = 40/187 (21%), Positives = 79/187 (42%), Gaps = 59/187 (31%)
Query: 359 LVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN-----ALVQMADGNQAQLAMSHL 413
L+ N P+ +T + LFG G+++ K++ +K V D A+ A++ L
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 414 NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA 473
NG +L K I+++ + +P S + ++ A
Sbjct: 108 NGLRLQTKTIKVS------------------------------YARPSSASIRD-----A 132
Query: 474 TLHLSNIPPSVSEEDLKVLFSSNG-------------GVVKGFKFFQKDRKMALIQMGSV 520
L++S +P ++++++L+ LFS G GV +G F + D+++
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI------EA 186
Query: 521 EEAVQAL 527
EEA++ L
Sbjct: 187 EEAIKGL 193
>gi|13899354 RNA binding motif protein 4B [Homo sapiens]
Length = 359
Score = 50.4 bits (119), Expect = 4e-06
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 46/191 (24%)
Query: 358 LLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHK 417
L + NL P T Q + LF YG V I+ K V + D A+ A+ +L+ +K
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYK 59
Query: 418 LHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHL 477
LHG I + SK+++ S LH+
Sbjct: 60 LHGVNINVEASKNKS-------------------------------------KASTKLHV 82
Query: 478 SNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL-G 536
NI P+ + ++L+ F G V++ + A + M E+AV+A+ L N + G
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIE----CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 138
Query: 537 ENHHLRVSFSK 547
+ H+++S S+
Sbjct: 139 KRMHVQLSTSR 149
>gi|93277122 RNA binding motif protein 4 [Homo sapiens]
Length = 364
Score = 50.1 bits (118), Expect = 5e-06
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 46/191 (24%)
Query: 358 LLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHK 417
L + NL P T Q + LF YG V I+ K V + D A+ A+ +L+ +K
Sbjct: 4 LFIGNL-PREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYK 59
Query: 418 LHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHL 477
LHG I + SK+++ S LH+
Sbjct: 60 LHGVNINVEASKNKS-------------------------------------KTSTKLHV 82
Query: 478 SNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL-G 536
NI P+ + ++L+ F G V++ + A + M E+AV+A+ L N + G
Sbjct: 83 GNISPTCTNKELRAKFEEYGPVIE----CDIVKDYAFVHMERAEDAVEAIRGLDNTEFQG 138
Query: 537 ENHHLRVSFSK 547
+ H+++S S+
Sbjct: 139 KRMHVQLSTSR 149
>gi|224028246 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 49.3 bits (116), Expect = 9e-06
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 16/116 (13%)
Query: 435 LPREGQE----DQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 490
+P GQ+ ++GLT D N F+KPG K F + L + N+PP ++EE+++
Sbjct: 41 IPANGQQASSQNEGLTIDLKN-----FRKPGEKTFTQ----RSRLFVGNLPPDITEEEMR 91
Query: 491 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 546
LF G G F KD+ I++ + A A ++L N L LRV F+
Sbjct: 92 KLFEKYGKA--GEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPL-RGKQLRVRFA 144
Score = 35.0 bits (79), Expect = 0.18
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 5/133 (3%)
Query: 28 PFIMSSNSASAANGN---DSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGK 84
P + AS+ N D K F+ + + LP D+TE E+ L +GK
Sbjct: 40 PIPANGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGK 99
Query: 85 VTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQ 144
+ + K K FI + T A ++ LRG+ + ++F+ H T + Q
Sbjct: 100 AGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP--LRGKQLRVRFACHSASLTVRNLPQ 157
Query: 145 ARAQAALQAVNSV 157
+ L+ SV
Sbjct: 158 YVSNELLEEAFSV 170
>gi|224028244 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 49.3 bits (116), Expect = 9e-06
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 16/116 (13%)
Query: 435 LPREGQE----DQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 490
+P GQ+ ++GLT D N F+KPG K F + L + N+PP ++EE+++
Sbjct: 41 IPANGQQASSQNEGLTIDLKN-----FRKPGEKTFTQ----RSRLFVGNLPPDITEEEMR 91
Query: 491 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 546
LF G G F KD+ I++ + A A ++L N L LRV F+
Sbjct: 92 KLFEKYGKA--GEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPL-RGKQLRVRFA 144
Score = 35.0 bits (79), Expect = 0.18
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 5/133 (3%)
Query: 28 PFIMSSNSASAANGN---DSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGK 84
P + AS+ N D K F+ + + LP D+TE E+ L +GK
Sbjct: 40 PIPANGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGK 99
Query: 85 VTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQ 144
+ + K K FI + T A ++ LRG+ + ++F+ H T + Q
Sbjct: 100 AGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP--LRGKQLRVRFACHSASLTVRNLPQ 157
Query: 145 ARAQAALQAVNSV 157
+ L+ SV
Sbjct: 158 YVSNELLEEAFSV 170
>gi|34932414 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 49.3 bits (116), Expect = 9e-06
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 16/116 (13%)
Query: 435 LPREGQE----DQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 490
+P GQ+ ++GLT D N F+KPG K F + L + N+PP ++EE+++
Sbjct: 41 IPANGQQASSQNEGLTIDLKN-----FRKPGEKTFTQ----RSRLFVGNLPPDITEEEMR 91
Query: 491 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 546
LF G G F KD+ I++ + A A ++L N L LRV F+
Sbjct: 92 KLFEKYGKA--GEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPL-RGKQLRVRFA 144
Score = 35.0 bits (79), Expect = 0.18
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 5/133 (3%)
Query: 28 PFIMSSNSASAANGN---DSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGK 84
P + AS+ N D K F+ + + LP D+TE E+ L +GK
Sbjct: 40 PIPANGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGK 99
Query: 85 VTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQ 144
+ + K K FI + T A ++ LRG+ + ++F+ H T + Q
Sbjct: 100 AGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP--LRGKQLRVRFACHSASLTVRNLPQ 157
Query: 145 ARAQAALQAVNSV 157
+ L+ SV
Sbjct: 158 YVSNELLEEAFSV 170
>gi|38149981 small nuclear ribonucleoprotein polypeptide B'' [Homo
sapiens]
Length = 225
Score = 48.1 bits (113), Expect = 2e-05
Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 28/220 (12%)
Query: 355 NSVLLVSNLNPE---RVTPQSLFILFGVYGDVQRVKILFNKKEN--ALVQMADGNQAQLA 409
N + ++N+N + +SL+ LF +G V + L K A V + + A
Sbjct: 6 NHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNA 65
Query: 410 MSHLNGHKLHGKPIRIT--------LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPG 461
+ L G +GKP+RI +SK + +E ++++ K + KKPG
Sbjct: 66 LRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPG 125
Query: 462 -----SKNFQNI---------FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 507
S N Q +PP+ L L+N+P +E L +LF+ G K +
Sbjct: 126 QGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPG-FKEVRLVP 184
Query: 508 KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 547
+A ++ + +A A L + +H ++++++K
Sbjct: 185 GRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAK 224
>gi|4507123 small nuclear ribonucleoprotein polypeptide B'' [Homo
sapiens]
Length = 225
Score = 48.1 bits (113), Expect = 2e-05
Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 28/220 (12%)
Query: 355 NSVLLVSNLNPE---RVTPQSLFILFGVYGDVQRVKILFNKKEN--ALVQMADGNQAQLA 409
N + ++N+N + +SL+ LF +G V + L K A V + + A
Sbjct: 6 NHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNA 65
Query: 410 MSHLNGHKLHGKPIRIT--------LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPG 461
+ L G +GKP+RI +SK + +E ++++ K + KKPG
Sbjct: 66 LRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTNKKPG 125
Query: 462 -----SKNFQNI---------FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 507
S N Q +PP+ L L+N+P +E L +LF+ G K +
Sbjct: 126 QGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPG-FKEVRLVP 184
Query: 508 KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 547
+A ++ + +A A L + +H ++++++K
Sbjct: 185 GRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAK 224
>gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo
sapiens]
Length = 282
Score = 47.8 bits (112), Expect = 3e-05
Identities = 70/287 (24%), Positives = 119/287 (41%), Gaps = 38/287 (13%)
Query: 175 MAMAGQSPVLRIIVENLFYPVTLDVL----HQIFSKFGTVLKI-ITFTKNNQFQALLQYA 229
MA+ P I + NL + D L + IFS+FG +L I ++ + + QA + +
Sbjct: 1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 60
Query: 230 DPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVK------YNNDKSRDYTRPDLPSG 283
+ SA +A S+ G Y+ +RI ++K S + D+ R+ +P
Sbjct: 61 EVSSATNALRSMQGFPFYDK--PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKP---KS 115
Query: 284 DSQPSLDQTMAAAFASPYAGA------GFPPTFAIP--------QAAGLSVPNV--HGAL 327
P+ + + A+P GA G PP P Q + P + L
Sbjct: 116 QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGL 175
Query: 328 APLAIPSAAAAAAAA--GRI--AIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDV 383
AP IP A G++ A P N +L ++NL PE L +LF +
Sbjct: 176 APGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNL-PEETNELMLSMLFNQFPGF 234
Query: 384 QRVKILFNKKENALVQMADGNQAQLAMSHLNGHKL-HGKPIRITLSK 429
+ V+++ + + A V+ + QA A L G K+ ++I+ +K
Sbjct: 235 KEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281
Score = 32.3 bits (72), Expect = 1.2
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 470 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALID 529
PP+ L L+N+P +E L +LF+ G K + +A ++ + +A A
Sbjct: 205 PPNHILFLTNLPEETNELMLSMLFNQFPG-FKEVRLVPGRHDIAFVEFDNEVQAGAARDA 263
Query: 530 LHNHDLGENHHLRVSFSK 547
L + +N+ +++SF+K
Sbjct: 264 LQGFKITQNNAMKISFAK 281
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 47.4 bits (111), Expect = 3e-05
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 59/187 (31%)
Query: 359 LVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN-----ALVQMADGNQAQLAMSHL 413
L+ N P+ +T LFG GD++ K++ +K V +D N A A++ L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 414 NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA 473
NG KL K I+++ + +P S + ++ A
Sbjct: 101 NGLKLQTKTIKVS------------------------------YARPSSASIRD-----A 125
Query: 474 TLHLSNIPPSVSEEDLKVLFSSNG-------------GVVKGFKFFQKDRKMALIQMGSV 520
L++S +P ++S+++++ LFS G GV +G F + D+++
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI------EA 179
Query: 521 EEAVQAL 527
EEA++ L
Sbjct: 180 EEAIKGL 186
Score = 31.6 bits (70), Expect = 2.0
Identities = 61/251 (24%), Positives = 95/251 (37%), Gaps = 51/251 (20%)
Query: 346 AIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENA-----LVQM 400
A P A ++ L VS L P+ ++ + + LF YG + +IL ++ ++
Sbjct: 115 ARPSSASIRDANLYVSGL-PKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173
Query: 401 ADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQE-----DQGLTKDYGNSPLH 455
+A+ A+ LNG K G IT+ K N + GQ Q + Y H
Sbjct: 174 DKRIEAEEAIKGLNGQKPLGAAEPITV-KFANNPSQKTGQALLTHLYQSSARRYAGPLHH 232
Query: 456 RFKKPGSKNFQNI-------------FPPSATLHLS---------------------NIP 481
+ ++ N N+ F P A +S N+
Sbjct: 233 QTQRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLS 292
Query: 482 PSVSEEDLKVLFSSNGGV--VKGFKFF--QKDRKMALIQMGSVEEAVQALIDLHNHDLGE 537
P E L LF G V VK + F K + + M + +EA A+ L+ + LGE
Sbjct: 293 PEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGE 352
Query: 538 NHHLRVSFSKS 548
L+VSF S
Sbjct: 353 -RVLQVSFKTS 362
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 47.4 bits (111), Expect = 3e-05
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 59/187 (31%)
Query: 359 LVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN-----ALVQMADGNQAQLAMSHL 413
L+ N P+ +T LFG GD++ K++ +K V +D N A A++ L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 414 NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA 473
NG KL K I+++ + +P S + ++ A
Sbjct: 101 NGLKLQTKTIKVS------------------------------YARPSSASIRD-----A 125
Query: 474 TLHLSNIPPSVSEEDLKVLFSSNG-------------GVVKGFKFFQKDRKMALIQMGSV 520
L++S +P ++S+++++ LFS G GV +G F + D+++
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI------EA 179
Query: 521 EEAVQAL 527
EEA++ L
Sbjct: 180 EEAIKGL 186
Score = 34.3 bits (77), Expect = 0.30
Identities = 64/246 (26%), Positives = 95/246 (38%), Gaps = 48/246 (19%)
Query: 346 AIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENA-----LVQM 400
A P A ++ L VS L P+ ++ + + LF YG + +IL ++ ++
Sbjct: 115 ARPSSASIRDANLYVSGL-PKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173
Query: 401 ADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNS------PL 454
+A+ A+ LNG K G IT+ N P + LT Y +S PL
Sbjct: 174 DKRIEAEEAIKGLNGQKPLGAAEPITVKFANN---PSQKTGQALLTHLYQSSARRYAGPL 230
Query: 455 H----RFKKPGSKNFQ---NIFPPSATLHLS---------------------NIPPSVSE 486
H RF+ N F P A +S N+ P E
Sbjct: 231 HHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADE 290
Query: 487 EDLKVLFSSNGGV--VKGFKFF--QKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLR 542
L LF G V VK + F K + + M + +EA A+ L+ + LGE L+
Sbjct: 291 SVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGE-RVLQ 349
Query: 543 VSFSKS 548
VSF S
Sbjct: 350 VSFKTS 355
Score = 29.3 bits (64), Expect = 9.8
Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 30/197 (15%)
Query: 53 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK------GKNQAFIEMNTEEA 106
SA + +++ LP +++ E+ L +G++ +L + FI +
Sbjct: 119 SASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 178
Query: 107 ANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSS------PNQARAQAA-----LQAVN 155
A + P+ +PI ++F+N+ KT + + AR A Q
Sbjct: 179 AEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFR 238
Query: 156 SVQSGNLALAA---SAAAVD-----AGMAMAGQSPVLR--IIVENLFYPVTLDVLHQIFS 205
N+A S A+D AG+ ++G + I V NL VL Q+F
Sbjct: 239 LDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFG 298
Query: 206 KFGTV--LKII-TFTKN 219
FG V +K+I FT N
Sbjct: 299 PFGAVTNVKVIRDFTTN 315
>gi|62526045 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 46.6 bits (109), Expect = 6e-05
Identities = 34/130 (26%), Positives = 69/130 (53%), Gaps = 7/130 (5%)
Query: 60 VIHIRKLPID-VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVT 118
V+ I +LP D TE +V L PFGKV ++L++ + +A++EM +EA ++ Y +
Sbjct: 677 VLLITELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAITAIMKYIETTP 736
Query: 119 PVLRGQPIYI-----QFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDA 173
++G+ + I + + +KE+K + ++ + + L+ ++ S + + S +A
Sbjct: 737 LTIKGKSVKICVPGKKKAQNKEVKKKTLESKKVSASTLKR-DADASKAVEIVTSTSAAKT 795
Query: 174 GMAMAGQSPV 183
G A A + V
Sbjct: 796 GQAKASVAKV 805
Score = 39.3 bits (90), Expect = 0.009
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 74 EVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 131
EV L PFG + ++L+L +A+IE+N +AA +MV +YT ++ G + I +
Sbjct: 921 EVYDLAKPFGGLKDILILSSHKKAYIEIN-RKAAESMVKFYTCFPVLMDGNQLSISMA 977
Score = 38.1 bits (87), Expect = 0.021
Identities = 17/55 (30%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 59 RVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNY 113
R +H+ LP D + V+ +GL FGKV + + + +N+A +++++ E+A +M ++
Sbjct: 1009 RFVHLDNLPEDGLQC-VLCVGLQFGKVDHHVFISNRNKAILQLDSPESAQSMYSF 1062
>gi|21626468 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 46.6 bits (109), Expect = 6e-05
Identities = 34/130 (26%), Positives = 69/130 (53%), Gaps = 7/130 (5%)
Query: 60 VIHIRKLPID-VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVT 118
V+ I +LP D TE +V L PFGKV ++L++ + +A++EM +EA ++ Y +
Sbjct: 677 VLLITELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEMEFKEAITAIMKYIETTP 736
Query: 119 PVLRGQPIYI-----QFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDA 173
++G+ + I + + +KE+K + ++ + + L+ ++ S + + S +A
Sbjct: 737 LTIKGKSVKICVPGKKKAQNKEVKKKTLESKKVSASTLKR-DADASKAVEIVTSTSAAKT 795
Query: 174 GMAMAGQSPV 183
G A A + V
Sbjct: 796 GQAKASVAKV 805
Score = 39.3 bits (90), Expect = 0.009
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 74 EVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 131
EV L PFG + ++L+L +A+IE+N +AA +MV +YT ++ G + I +
Sbjct: 921 EVYDLAKPFGGLKDILILSSHKKAYIEIN-RKAAESMVKFYTCFPVLMDGNQLSISMA 977
Score = 38.1 bits (87), Expect = 0.021
Identities = 17/55 (30%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 59 RVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNY 113
R +H+ LP D + V+ +GL FGKV + + + +N+A +++++ E+A +M ++
Sbjct: 1009 RFVHLDNLPEDGLQC-VLCVGLQFGKVDHHVFISNRNKAILQLDSPESAQSMYSF 1062
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 45.1 bits (105), Expect = 2e-04
Identities = 84/419 (20%), Positives = 166/419 (39%), Gaps = 79/419 (18%)
Query: 24 VTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFG 83
V+NGP +SN S+ N N + + + + +I + LP ++T+ E SL G
Sbjct: 15 VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLI-VNYLPQNMTQEEFRSLFGSIG 73
Query: 84 KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPN 143
++ + +++ K + GQ + F N+ + K
Sbjct: 74 EIESCKLVRDK--------------------------ITGQSLGYGFVNYIDPKD----- 102
Query: 144 QARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQI 203
A+ A+ +N ++ + S A + + V L +T L Q+
Sbjct: 103 ---AEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----LYVSGLPKTMTQKELEQL 154
Query: 204 FSKFGTVLK----IITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 259
FS++G ++ + T ++ +++ + A+ A L+GQ A
Sbjct: 155 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT--------- 205
Query: 260 LTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFASP--YAGAGFPPTFAIPQAAG 317
+ VK+ N+ S+ ++ L L Q+ + P + F + A G
Sbjct: 206 -EPITVKFANNPSQKSSQALLSQ------LYQSPNRRYPGPLHHQAQRFRLDNLLNMAYG 258
Query: 318 LSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILF 377
+ +P+ I + + IPG G G + V NL+P+ L+ LF
Sbjct: 259 VK------RFSPITIDGMTSLVG----MNIPGHTGTGWCIF-VYNLSPDS-DESVLWQLF 306
Query: 378 GVYGDVQRVKIL--FNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 431
G +G V VK++ FN K V M + ++A +A++ LNG++L + ++++ ++
Sbjct: 307 GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 365
Score = 42.7 bits (99), Expect = 9e-04
Identities = 40/187 (21%), Positives = 79/187 (42%), Gaps = 59/187 (31%)
Query: 359 LVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN-----ALVQMADGNQAQLAMSHL 413
L+ N P+ +T + LFG G+++ K++ +K V D A+ A++ L
Sbjct: 51 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 110
Query: 414 NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA 473
NG +L K I+++ + +P S + ++ A
Sbjct: 111 NGLRLQTKTIKVS------------------------------YARPSSASIRD-----A 135
Query: 474 TLHLSNIPPSVSEEDLKVLFSSNG-------------GVVKGFKFFQKDRKMALIQMGSV 520
L++S +P ++++++L+ LFS G GV +G F + D+++
Sbjct: 136 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI------EA 189
Query: 521 EEAVQAL 527
EEA++ L
Sbjct: 190 EEAIKGL 196
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 45.1 bits (105), Expect = 2e-04
Identities = 84/419 (20%), Positives = 166/419 (39%), Gaps = 79/419 (18%)
Query: 24 VTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFG 83
V+NGP +SN S+ N N + + + + +I + LP ++T+ E SL G
Sbjct: 12 VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLI-VNYLPQNMTQEEFRSLFGSIG 70
Query: 84 KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPN 143
++ + +++ K + GQ + F N+ + K
Sbjct: 71 EIESCKLVRDK--------------------------ITGQSLGYGFVNYIDPKD----- 99
Query: 144 QARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQI 203
A+ A+ +N ++ + S A + + V L +T L Q+
Sbjct: 100 ---AEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----LYVSGLPKTMTQKELEQL 151
Query: 204 FSKFGTVLK----IITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 259
FS++G ++ + T ++ +++ + A+ A L+GQ A
Sbjct: 152 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT--------- 202
Query: 260 LTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFASP--YAGAGFPPTFAIPQAAG 317
+ VK+ N+ S+ ++ L L Q+ + P + F + A G
Sbjct: 203 -EPITVKFANNPSQKSSQALLSQ------LYQSPNRRYPGPLHHQAQRFRLDNLLNMAYG 255
Query: 318 LSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILF 377
+ +P+ I + + IPG G G + V NL+P+ L+ LF
Sbjct: 256 VK------RFSPITIDGMTSLVG----MNIPGHTGTGWCIF-VYNLSPDS-DESVLWQLF 303
Query: 378 GVYGDVQRVKIL--FNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 431
G +G V VK++ FN K V M + ++A +A++ LNG++L + ++++ ++
Sbjct: 304 GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 362
Score = 42.7 bits (99), Expect = 9e-04
Identities = 40/187 (21%), Positives = 79/187 (42%), Gaps = 59/187 (31%)
Query: 359 LVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN-----ALVQMADGNQAQLAMSHL 413
L+ N P+ +T + LFG G+++ K++ +K V D A+ A++ L
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 414 NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA 473
NG +L K I+++ + +P S + ++ A
Sbjct: 108 NGLRLQTKTIKVS------------------------------YARPSSASIRD-----A 132
Query: 474 TLHLSNIPPSVSEEDLKVLFSSNG-------------GVVKGFKFFQKDRKMALIQMGSV 520
L++S +P ++++++L+ LFS G GV +G F + D+++
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI------EA 186
Query: 521 EEAVQAL 527
EEA++ L
Sbjct: 187 EEAIKGL 193
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 45.1 bits (105), Expect = 2e-04
Identities = 84/419 (20%), Positives = 166/419 (39%), Gaps = 79/419 (18%)
Query: 24 VTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFG 83
V+NGP +SN S+ N N + + + + +I + LP ++T+ E SL G
Sbjct: 29 VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLI-VNYLPQNMTQEEFRSLFGSIG 87
Query: 84 KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPN 143
++ + +++ K + GQ + F N+ + K
Sbjct: 88 EIESCKLVRDK--------------------------ITGQSLGYGFVNYIDPKD----- 116
Query: 144 QARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQI 203
A+ A+ +N ++ + S A + + V L +T L Q+
Sbjct: 117 ---AEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----LYVSGLPKTMTQKELEQL 168
Query: 204 FSKFGTVLK----IITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 259
FS++G ++ + T ++ +++ + A+ A L+GQ A
Sbjct: 169 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT--------- 219
Query: 260 LTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFASP--YAGAGFPPTFAIPQAAG 317
+ VK+ N+ S+ ++ L L Q+ + P + F + A G
Sbjct: 220 -EPITVKFANNPSQKSSQALLSQ------LYQSPNRRYPGPLHHQAQRFRLDNLLNMAYG 272
Query: 318 LSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILF 377
+ +P+ I + + IPG G G + V NL+P+ L+ LF
Sbjct: 273 VK------RFSPITIDGMTSLVG----MNIPGHTGTGWCIF-VYNLSPDS-DESVLWQLF 320
Query: 378 GVYGDVQRVKIL--FNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 431
G +G V VK++ FN K V M + ++A +A++ LNG++L + ++++ ++
Sbjct: 321 GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 379
Score = 42.7 bits (99), Expect = 9e-04
Identities = 40/187 (21%), Positives = 79/187 (42%), Gaps = 59/187 (31%)
Query: 359 LVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN-----ALVQMADGNQAQLAMSHL 413
L+ N P+ +T + LFG G+++ K++ +K V D A+ A++ L
Sbjct: 65 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 124
Query: 414 NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA 473
NG +L K I+++ + +P S + ++ A
Sbjct: 125 NGLRLQTKTIKVS------------------------------YARPSSASIRD-----A 149
Query: 474 TLHLSNIPPSVSEEDLKVLFSSNG-------------GVVKGFKFFQKDRKMALIQMGSV 520
L++S +P ++++++L+ LFS G GV +G F + D+++
Sbjct: 150 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI------EA 203
Query: 521 EEAVQAL 527
EEA++ L
Sbjct: 204 EEAIKGL 210
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 45.1 bits (105), Expect = 2e-04
Identities = 84/419 (20%), Positives = 166/419 (39%), Gaps = 79/419 (18%)
Query: 24 VTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFG 83
V+NGP +SN S+ N N + + + + +I + LP ++T+ E SL G
Sbjct: 12 VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLI-VNYLPQNMTQEEFRSLFGSIG 70
Query: 84 KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPN 143
++ + +++ K + GQ + F N+ + K
Sbjct: 71 EIESCKLVRDK--------------------------ITGQSLGYGFVNYIDPKD----- 99
Query: 144 QARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQI 203
A+ A+ +N ++ + S A + + V L +T L Q+
Sbjct: 100 ---AEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----LYVSGLPKTMTQKELEQL 151
Query: 204 FSKFGTVLK----IITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 259
FS++G ++ + T ++ +++ + A+ A L+GQ A
Sbjct: 152 FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT--------- 202
Query: 260 LTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFASP--YAGAGFPPTFAIPQAAG 317
+ VK+ N+ S+ ++ L L Q+ + P + F + A G
Sbjct: 203 -EPITVKFANNPSQKSSQALLSQ------LYQSPNRRYPGPLHHQAQRFRLDNLLNMAYG 255
Query: 318 LSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILF 377
+ +P+ I + + IPG G G + V NL+P+ L+ LF
Sbjct: 256 VK------RFSPITIDGMTSLVG----MNIPGHTGTGWCIF-VYNLSPDS-DESVLWQLF 303
Query: 378 GVYGDVQRVKIL--FNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 431
G +G V VK++ FN K V M + ++A +A++ LNG++L + ++++ ++
Sbjct: 304 GPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 362
Score = 42.7 bits (99), Expect = 9e-04
Identities = 40/187 (21%), Positives = 79/187 (42%), Gaps = 59/187 (31%)
Query: 359 LVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN-----ALVQMADGNQAQLAMSHL 413
L+ N P+ +T + LFG G+++ K++ +K V D A+ A++ L
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 414 NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA 473
NG +L K I+++ + +P S + ++ A
Sbjct: 108 NGLRLQTKTIKVS------------------------------YARPSSASIRD-----A 132
Query: 474 TLHLSNIPPSVSEEDLKVLFSSNG-------------GVVKGFKFFQKDRKMALIQMGSV 520
L++S +P ++++++L+ LFS G GV +G F + D+++
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI------EA 186
Query: 521 EEAVQAL 527
EEA++ L
Sbjct: 187 EEAIKGL 193
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,927,624
Number of Sequences: 37866
Number of extensions: 907728
Number of successful extensions: 4337
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 164
Number of HSP's that attempted gapping in prelim test: 3855
Number of HSP's gapped (non-prelim): 550
length of query: 550
length of database: 18,247,518
effective HSP length: 107
effective length of query: 443
effective length of database: 14,195,856
effective search space: 6288764208
effective search space used: 6288764208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.