Search of human proteins with 14165461

Search of human proteins with 14165461

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14165461 nuclear prelamin A recognition factor isoform b
[Homo sapiens]
         (502 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14165461 nuclear prelamin A recognition factor isoform b [Hom...  1019   0.0  
gi|6912524 nuclear prelamin A recognition factor isoform a [Homo...   904   0.0  
gi|134284357 nuclear prelamin A recognition factor isoform d [Ho...   785   0.0  
gi|84452151 nuclear prelamin A recognition factor isoform c [Hom...   779   0.0  
gi|11968051 nuclear prelamin A recognition factor-like [Homo sap...   412   e-115
gi|15193292 NLR family, pyrin domain containing 12 isoform 1 [Ho...    37   0.042
gi|66346693 FAT tumor suppressor 1 precursor [Homo sapiens]            35   0.21 
gi|18543327 tectonic family member 1 isoform 3 [Homo sapiens]          32   1.3  
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom...    30   5.1  
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom...    30   5.1  
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ...    30   5.1  
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]     30   5.1  
gi|30794372 polybromo 1 isoform 1 [Homo sapiens]                       30   5.1  
gi|93102371 polybromo 1 isoform 2 [Homo sapiens]                       30   5.1  
gi|41281917 polybromo 1 isoform 4 [Homo sapiens]                       30   5.1  
gi|156547039 zinc finger protein 223 [Homo sapiens]                    30   5.1  
gi|155029539 alpha accessory factor 132 [Homo sapiens]                 29   8.7  
gi|13376842 tankyrase, TRF1-interacting ankyrin-related ADP-ribo...    29   8.7  

>gi|14165461 nuclear prelamin A recognition factor isoform b [Homo
           sapiens]
          Length = 502

 Score = 1019 bits (2634), Expect = 0.0
 Identities = 502/502 (100%), Positives = 502/502 (100%)

Query: 1   MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCM 60
           MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCM
Sbjct: 1   MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCM 60

Query: 61  TAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRR 120
           TAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRR
Sbjct: 61  TAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRR 120

Query: 121 LCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAE 180
           LCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAE
Sbjct: 121 LCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAE 180

Query: 181 RVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESL 240
           RVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESL
Sbjct: 181 RVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESL 240

Query: 241 PPALHGSRGADCVLTSEISQAWWCTPVITATREAAARESLEPGRQRLQRDKIAPLDSSLG 300
           PPALHGSRGADCVLTSEISQAWWCTPVITATREAAARESLEPGRQRLQRDKIAPLDSSLG
Sbjct: 241 PPALHGSRGADCVLTSEISQAWWCTPVITATREAAARESLEPGRQRLQRDKIAPLDSSLG 300

Query: 301 GGGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNED 360
           GGGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNED
Sbjct: 301 GGGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNED 360

Query: 361 VEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLAC 420
           VEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLAC
Sbjct: 361 VEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLAC 420

Query: 421 AGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKA 480
           AGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKA
Sbjct: 421 AGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKA 480

Query: 481 REVLHTTYQSQERGTHSLDIKW 502
           REVLHTTYQSQERGTHSLDIKW
Sbjct: 481 REVLHTTYQSQERGTHSLDIKW 502


>gi|6912524 nuclear prelamin A recognition factor isoform a [Homo
           sapiens]
          Length = 456

 Score =  904 bits (2337), Expect = 0.0
 Identities = 456/502 (90%), Positives = 456/502 (90%), Gaps = 46/502 (9%)

Query: 1   MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCM 60
           MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCM
Sbjct: 1   MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCM 60

Query: 61  TAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRR 120
           TAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRR
Sbjct: 61  TAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRR 120

Query: 121 LCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAE 180
           LCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAE
Sbjct: 121 LCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAE 180

Query: 181 RVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESL 240
           RVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESL
Sbjct: 181 RVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESL 240

Query: 241 PPALHGSRGADCVLTSEISQAWWCTPVITATREAAARESLEPGRQRLQRDKIAPLDSSLG 300
           PPALHGSRGADCVLTS                                            
Sbjct: 241 PPALHGSRGADCVLTS-------------------------------------------- 256

Query: 301 GGGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNED 360
             GEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNED
Sbjct: 257 --GEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNED 314

Query: 361 VEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLAC 420
           VEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLAC
Sbjct: 315 VEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLAC 374

Query: 421 AGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKA 480
           AGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKA
Sbjct: 375 AGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKA 434

Query: 481 REVLHTTYQSQERGTHSLDIKW 502
           REVLHTTYQSQERGTHSLDIKW
Sbjct: 435 REVLHTTYQSQERGTHSLDIKW 456


>gi|134284357 nuclear prelamin A recognition factor isoform d [Homo
           sapiens]
          Length = 408

 Score =  785 bits (2027), Expect = 0.0
 Identities = 408/502 (81%), Positives = 408/502 (81%), Gaps = 94/502 (18%)

Query: 1   MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEKGEFHKLADAKIFLSDCLACDSCM 60
           MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGE                        
Sbjct: 1   MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGE------------------------ 36

Query: 61  TAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRR 120
                                   KCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRR
Sbjct: 37  ------------------------KCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRR 72

Query: 121 LCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAE 180
           LCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAE
Sbjct: 73  LCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAE 132

Query: 181 RVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESL 240
           RVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESL
Sbjct: 133 RVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESL 192

Query: 241 PPALHGSRGADCVLTSEISQAWWCTPVITATREAAARESLEPGRQRLQRDKIAPLDSSLG 300
           PPALHGSRGADCVLTS                                            
Sbjct: 193 PPALHGSRGADCVLTS-------------------------------------------- 208

Query: 301 GGGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNED 360
             GEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNED
Sbjct: 209 --GEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNED 266

Query: 361 VEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLAC 420
           VEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLAC
Sbjct: 267 VEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLAC 326

Query: 421 AGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKA 480
           AGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKA
Sbjct: 327 AGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPKA 386

Query: 481 REVLHTTYQSQERGTHSLDIKW 502
           REVLHTTYQSQERGTHSLDIKW
Sbjct: 387 REVLHTTYQSQERGTHSLDIKW 408


>gi|84452151 nuclear prelamin A recognition factor isoform c [Homo
           sapiens]
          Length = 397

 Score =  779 bits (2012), Expect = 0.0
 Identities = 397/443 (89%), Positives = 397/443 (89%), Gaps = 46/443 (10%)

Query: 60  MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR 119
           MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR
Sbjct: 1   MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR 60

Query: 120 RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYA 179
           RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYA
Sbjct: 61  RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYA 120

Query: 180 ERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQES 239
           ERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQES
Sbjct: 121 ERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQES 180

Query: 240 LPPALHGSRGADCVLTSEISQAWWCTPVITATREAAARESLEPGRQRLQRDKIAPLDSSL 299
           LPPALHGSRGADCVLTS                                           
Sbjct: 181 LPPALHGSRGADCVLTS------------------------------------------- 197

Query: 300 GGGGEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNE 359
              GEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNE
Sbjct: 198 ---GEIAQIMEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNE 254

Query: 360 DVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLA 419
           DVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLA
Sbjct: 255 DVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLA 314

Query: 420 CAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPK 479
           CAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPK
Sbjct: 315 CAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPK 374

Query: 480 AREVLHTTYQSQERGTHSLDIKW 502
           AREVLHTTYQSQERGTHSLDIKW
Sbjct: 375 AREVLHTTYQSQERGTHSLDIKW 397


>gi|11968051 nuclear prelamin A recognition factor-like [Homo
           sapiens]
          Length = 476

 Score =  412 bits (1059), Expect = e-115
 Identities = 219/503 (43%), Positives = 307/503 (61%), Gaps = 57/503 (11%)

Query: 9   KECSKKTKTDDQENVSADAPSPAQENG------EKGEFHKLADAKIFLSDCLACDSCMTA 62
           +EC K  K + +   S  A    +++G      + G   +L  AK+ L+DCLAC  C+T+
Sbjct: 22  QECIKPVKVEKRAG-SGVAKIRIEDDGSYFQINQDGGTRRLEKAKVSLNDCLACSGCITS 80

Query: 63  EEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLC 122
            E V ++QQ+ ++  +VL+ NK    S+ +++VVSV PQS    AA+F L+ TD +R+L 
Sbjct: 81  AETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTARKLT 140

Query: 123 GFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAERV 182
            F K +GVH+VFDT  +  FS+LESQ+EFVRR+R  ++  + LP+L SACPGW+ YAE+ 
Sbjct: 141 SFFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADCRQALPLLASACPGWICYAEKT 200

Query: 183 LGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPP 242
            G  I  H+ TA+SPQQVMGSLVKD+FA+QQ+L+P+KI+HV V PCYDKKLEA +     
Sbjct: 201 HGSFILPHISTARSPQQVMGSLVKDFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFFN 260

Query: 243 ALHGSRGADCVLTSEISQAWWCTPVITATREAAARESLEPGRQRLQRDKIAPLDSSLGGG 302
             H +R  DCVLT+                                              
Sbjct: 261 QEHQTRDVDCVLTT---------------------------------------------- 274

Query: 303 GEIAQIMEQGDLSVRD---AAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNE 359
           GE+ +++E+  +S+ D   A +D+L      ++ T H G  S G+L H+FRHAA+ELF  
Sbjct: 275 GEVFRLLEEEGVSLPDLEPAPLDSLCSGASAEEPTSHRGGGSGGYLEHVFRHAARELFGI 334

Query: 360 DVEEVTYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLA 419
            V EVTY+ LRNKDFQEVTLEK G+V+L FA AYGFRNIQN++ +LK+G+ P+H+VEV+A
Sbjct: 335 HVAEVTYKPLRNKDFQEVTLEKEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMA 394

Query: 420 CAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPVRRPESSAHVQELYQEWLEGINSPK 479
           C  GCLNG GQ Q PD    + LL+ +E +Y  +    PE +  VQELY  WL+G +S  
Sbjct: 395 CPSGCLNGGGQLQAPD-RPSRELLQHVERLYGMVRAEAPEDAPGVQELYTHWLQGTDSEC 453

Query: 480 AREVLHTTYQSQERGTHSLDIKW 502
           A  +LHT Y + E+ +  L I+W
Sbjct: 454 AGRLLHTQYHAVEKASTGLGIRW 476


>gi|15193292 NLR family, pyrin domain containing 12 isoform 1 [Homo
           sapiens]
          Length = 287

 Score = 37.0 bits (84), Expect = 0.042
 Identities = 18/30 (60%), Positives = 21/30 (70%)

Query: 258 ISQAWWCTPVITATREAAARESLEPGRQRL 287
           +SQAWW T V  AT+EA A   L+P RQRL
Sbjct: 1   MSQAWWHTSVSPATQEAKAGGLLQPRRQRL 30


>gi|66346693 FAT tumor suppressor 1 precursor [Homo sapiens]
          Length = 4588

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 9/116 (7%)

Query: 232 KLEALQESLPPALHGSRGADCV--LTSEISQAWWCTPVITATREAAARESLEPGRQRLQR 289
           ++E L       L+GS G   +  LT  I QA  C PVITA   + +    +P    +  
Sbjct: 219 EMEILAADRGMKLYGSSGISSMAKLTVHIEQANECAPVITAVTLSPSELDRDPAYAIVTV 278

Query: 290 DKIAPLDSSLGGGGEIAQI-MEQGDLSVRDAAVDTLFGDLKEDKVTRHDGASSDGH 344
           D     D   G  G+IA + +  GDL  +   V +  G  KE KV    G   D H
Sbjct: 279 D-----DCDQGANGDIASLSIVAGDLLQQFRTVRSFPGS-KEYKVKAIGGIDWDSH 328


>gi|18543327 tectonic family member 1 isoform 3 [Homo sapiens]
          Length = 573

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 252 CVLTSEISQAWWCTPVITATREAAARESLE 281
           C   +   QA+W TPVI A  EA AR SLE
Sbjct: 231 CTDNNPAGQAYWFTPVIPALWEAEARGSLE 260


>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
           sapiens]
          Length = 305

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 182 VLGRPIT---AHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPC 228
           + GRP     A      + +++ G L+ D+FA+++  +PEK    + APC
Sbjct: 235 ISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPC 284


>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
           sapiens]
          Length = 305

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 182 VLGRPIT---AHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPC 228
           + GRP     A      + +++ G L+ D+FA+++  +PEK    + APC
Sbjct: 235 ISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPC 284


>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
           sapiens]
          Length = 316

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 182 VLGRPIT---AHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPC 228
           + GRP     A      + +++ G L+ D+FA+++  +PEK    + APC
Sbjct: 246 ISGRPAAGTAAASANGAAIKKLSGPLISDFFAKRKRSAPEKSSGDVPAPC 295


>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
          Length = 3664

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 454 PVRRPESSAHVQE-LYQEWLEGINSPKAREVLHTTYQSQERGTHSLD 499
           P   P  S H +E  Y+  L+G +  + R   H+ Y   ERGT   D
Sbjct: 114 PAYGPPPSLHAREGRYERRLDGASDNRERAYEHSAYGHHERGTGGFD 160


>gi|30794372 polybromo 1 isoform 1 [Homo sapiens]
          Length = 1602

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 17/79 (21%)

Query: 350 RHAAKELFNEDVEEVTYRALR-NKDFQEV----------------TLEKNGEVVLRFAAA 392
           R+   +LF E + EV  RA R N+   E+                 L KNGE++L  A +
Sbjct: 801 RYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSPALS 860

Query: 393 YGFRNIQNMILKLKKGKFP 411
           Y  +++ N + K +K K P
Sbjct: 861 YTTKHLHNDVEKERKEKLP 879


>gi|93102371 polybromo 1 isoform 2 [Homo sapiens]
          Length = 1582

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 17/79 (21%)

Query: 350 RHAAKELFNEDVEEVTYRALR-NKDFQEV----------------TLEKNGEVVLRFAAA 392
           R+   +LF E + EV  RA R N+   E+                 L KNGE++L  A +
Sbjct: 833 RYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSPALS 892

Query: 393 YGFRNIQNMILKLKKGKFP 411
           Y  +++ N + K +K K P
Sbjct: 893 YTTKHLHNDVEKERKEKLP 911


>gi|41281917 polybromo 1 isoform 4 [Homo sapiens]
          Length = 1582

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 17/79 (21%)

Query: 350 RHAAKELFNEDVEEVTYRALR-NKDFQEV----------------TLEKNGEVVLRFAAA 392
           R+   +LF E + EV  RA R N+   E+                 L KNGE++L  A +
Sbjct: 833 RYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSPALS 892

Query: 393 YGFRNIQNMILKLKKGKFP 411
           Y  +++ N + K +K K P
Sbjct: 893 YTTKHLHNDVEKERKEKLP 911


>gi|156547039 zinc finger protein 223 [Homo sapiens]
          Length = 482

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 2   KCEHCTRKECSKKTKTDDQENVSADAPSPAQENGEK 37
           KCE C +K   +  + D Q+N S + PS  ++ G++
Sbjct: 429 KCEDCGKKLVYRSYRKDQQKNHSGENPSKCEDCGKR 464


>gi|155029539 alpha accessory factor 132 [Homo sapiens]
          Length = 1217

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 56  CDSCMTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVT 115
           C SC+T ++   L  ++++D   VL+ NK    S    L+      SL  F+A+      
Sbjct: 848 CASCLTVQDNWTLELESSQDIQDVLDANKSLPESSLTDLLSDNFTDSLVSFSAEI----- 902

Query: 116 DASRRLC 122
             SR LC
Sbjct: 903 -LSRTLC 908


>gi|13376842 tankyrase, TRF1-interacting ankyrin-related ADP-ribose
           polymerase 2 [Homo sapiens]
          Length = 1166

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 26/160 (16%)

Query: 258 ISQAWWCTPVITATREAAARESLEPGRQRLQ---------RDKIAPLDSSLGGGGEIAQI 308
           ++  W  TP+     EAAA+   E  +  LQ         RD   PLD    G  +I  +
Sbjct: 587 VADLWKFTPL----HEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDL 642

Query: 309 MEQGDLSVRDAAVDTLFGDLKE----DKVTRHDGASSDGHLAHIFRHAAKELFNEDVEEV 364
           + +GD ++ DAA       +K+    D V   D  +   H   +  H A    N +V E 
Sbjct: 643 L-RGDAALLDAAKKGCLARVKKLSSPDNVNCRD--TQGRHSTPL--HLAAGYNNLEVAEY 697

Query: 365 TYRALRNKDFQEVTLEKNGEVVLRFAAAYGFRNIQNMILK 404
             +   + + Q+    K G + L  AA+YG  ++  +++K
Sbjct: 698 LLQHGADVNAQD----KGGLIPLHNAASYGHVDVAALLIK 733


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,246,198
Number of Sequences: 37866
Number of extensions: 840718
Number of successful extensions: 2346
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2323
Number of HSP's gapped (non-prelim): 28
length of query: 502
length of database: 18,247,518
effective HSP length: 107
effective length of query: 395
effective length of database: 14,195,856
effective search space: 5607363120
effective search space used: 5607363120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.