Guide to the Human Genome
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Name: RBM7 Sequence: fasta or formatted (266aa) NCBI GI: 9994185
Description:

RNA binding motif protein 7

Referenced in:

RNA-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         13           4
 C cysteine            0.0          0           0
 D aspartate           6.8         18           2
 E glutamate           3.8         10           2
 F phenylalanine       5.3         14           2
 G glycine             6.0         16           2
 H histidine           5.3         14           2
 I isoleucine          2.6          7           2
 K lysine              5.3         14           1
 L leucine             4.5         12           2
 M methionine          2.6          7           1
 N asparagine          4.5         12           1
 P proline             5.3         14           1
 Q glutamine           6.4         17           1
 R arginine            8.3         22           2
 S serine             15.0         40           4
 T threonine           3.4          9           1
 V valine              4.5         12           1
 W tryptophan          1.1          3           1
 Y tyrosine            4.5         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 7 
RBM11                 0.185   RNA binding motif protein 11 
SF3B4                 0.097   splicing factor 3b, subunit 4 
RBMX                  0.080   RNA binding motif protein, X-linked 
RBMY1F                0.070   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1J                0.070   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1E                0.069   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1B                0.069   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1D                0.069   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1A1               0.069   RNA binding motif protein, Y-linked, family 1, member...
RBMXL1                0.067   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.067   RNA binding motif protein, X-linked-like 1 
TIA1                  0.063   TIA1 protein isoform 1 
CSTF2                 0.063   cleavage stimulation factor subunit 2 
SFRS12                0.063   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.063   splicing factor, arginine/serine-rich 12 isoform b [...
TIA1                  0.061   TIA1 protein isoform 2 
RBMX2                 0.061   RNA binding motif protein, X-linked 2 
PABPC1L2B             0.059   poly(A) binding protein, cytoplasmic 1-like 2B [Hom...
PABPC1L2A             0.059   poly(A) binding protein, cytoplasmic 1-like 2A [Homo...
HNRNPM                0.059   heterogeneous nuclear ribonucleoprotein M isoform a ...
HNRNPM                0.059   heterogeneous nuclear ribonucleoprotein M isoform b...
PABPC3                0.057   poly(A) binding protein, cytoplasmic 3 
SRrp35                0.057   serine-arginine repressor protein 
TIAL1                 0.055   TIA-1 related protein isoform 1 
CSTF2T                0.055   cleavage stimulation factor, 3' pre-RNA, subunit 2, ...
MYEF2                 0.055   myelin expression factor 2 
FUSIP1                0.055   FUS interacting protein (serine-arginine rich) 1 iso...
PABPC4                0.055   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.055   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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