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Search of human proteins with 94721344
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94721344 zinc finger, CW type with PWWP domain 1 [Homo
sapiens]
(648 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94721344 zinc finger, CW type with PWWP domain 1 [Homo sapiens] 1316 0.0
gi|94536776 zinc finger, CW type with PWWP domain 2 [Homo sapiens] 79 1e-14
gi|19913356 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 65 1e-10
gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 65 1e-10
gi|6594683 Wolf-Hirschhorn syndrome candidate 1 protein isoform ... 65 1e-10
gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 65 1e-10
gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 65 1e-10
gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isofor... 65 1e-10
gi|145553976 zinc finger, CW type with coiled-coil domain 2 isof... 59 1e-08
gi|145553971 zinc finger, CW type with coiled-coil domain 2 isof... 59 1e-08
gi|4504191 mutS homolog 6 [Homo sapiens] 53 8e-07
gi|13699811 WHSC1L1 protein isoform long [Homo sapiens] 53 1e-06
gi|13699813 WHSC1L1 protein isoform short [Homo sapiens] 53 1e-06
gi|28872812 MORC family CW-type zinc finger 3 [Homo sapiens] 49 2e-05
gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo ... 47 7e-05
gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo ... 47 7e-05
gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo ... 47 7e-05
gi|27477095 nuclear receptor binding SET domain protein 1 isofor... 44 4e-04
gi|19923586 nuclear receptor binding SET domain protein 1 isofor... 44 4e-04
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 44 5e-04
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 44 5e-04
gi|157266334 tubby like protein 1 [Homo sapiens] 43 8e-04
gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Ho... 41 0.003
gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Ho... 41 0.003
gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Ho... 41 0.003
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 41 0.004
gi|87299628 biorientation of chromosomes in cell division 1-like... 40 0.005
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens] 40 0.007
gi|157738619 smoothelin-like 1 [Homo sapiens] 40 0.007
gi|9257180 adducin 2 isoform c [Homo sapiens] 40 0.009
>gi|94721344 zinc finger, CW type with PWWP domain 1 [Homo sapiens]
Length = 648
Score = 1316 bits (3407), Expect = 0.0
Identities = 648/648 (100%), Positives = 648/648 (100%)
Query: 1 MMTTLQNKEECGKGPKRIFAPPAQKSYSLLPCSPNSPKEETPGISSPETEARISLPKASL 60
MMTTLQNKEECGKGPKRIFAPPAQKSYSLLPCSPNSPKEETPGISSPETEARISLPKASL
Sbjct: 1 MMTTLQNKEECGKGPKRIFAPPAQKSYSLLPCSPNSPKEETPGISSPETEARISLPKASL 60
Query: 61 KKKEEKATMKNVPSREQEKKRKAQINKQAEKKEKEKSSLTNAEFEEIVQIVLQKSLQECL 120
KKKEEKATMKNVPSREQEKKRKAQINKQAEKKEKEKSSLTNAEFEEIVQIVLQKSLQECL
Sbjct: 61 KKKEEKATMKNVPSREQEKKRKAQINKQAEKKEKEKSSLTNAEFEEIVQIVLQKSLQECL 120
Query: 121 GMGSGLDFAETSCAQPVVSTQSDKEPGITASATDTDNANGEEVPHTQEISVSWEGEAAPE 180
GMGSGLDFAETSCAQPVVSTQSDKEPGITASATDTDNANGEEVPHTQEISVSWEGEAAPE
Sbjct: 121 GMGSGLDFAETSCAQPVVSTQSDKEPGITASATDTDNANGEEVPHTQEISVSWEGEAAPE 180
Query: 181 IRTSKLGQPDPAPSKKKSNRLTLSKRKKEAHEKVEKTQGGHEHRQEDRLKKTVQDHSQIR 240
IRTSKLGQPDPAPSKKKSNRLTLSKRKKEAHEKVEKTQGGHEHRQEDRLKKTVQDHSQIR
Sbjct: 181 IRTSKLGQPDPAPSKKKSNRLTLSKRKKEAHEKVEKTQGGHEHRQEDRLKKTVQDHSQIR 240
Query: 241 DQQKGEISGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPE 300
DQQKGEISGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPE
Sbjct: 241 DQQKGEISGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPE 300
Query: 301 ETWTGLESDVAYASYIPGSIIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYHV 360
ETWTGLESDVAYASYIPGSIIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYHV
Sbjct: 301 ETWTGLESDVAYASYIPGSIIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYHV 360
Query: 361 TFFGETVSRAWIPVNMLKNFQELSLELSVMKKRRNDCSQKLGVALMMAQEAEQISIQERV 420
TFFGETVSRAWIPVNMLKNFQELSLELSVMKKRRNDCSQKLGVALMMAQEAEQISIQERV
Sbjct: 361 TFFGETVSRAWIPVNMLKNFQELSLELSVMKKRRNDCSQKLGVALMMAQEAEQISIQERV 420
Query: 421 NLFGFWSRFNGSNSNGERKDLQLSGLNSPGSCLEKKEKEEELEKEEGEKTDPILPIRKRV 480
NLFGFWSRFNGSNSNGERKDLQLSGLNSPGSCLEKKEKEEELEKEEGEKTDPILPIRKRV
Sbjct: 421 NLFGFWSRFNGSNSNGERKDLQLSGLNSPGSCLEKKEKEEELEKEEGEKTDPILPIRKRV 480
Query: 481 KIQTQKTKPRGLGGDAGTADGRGRTLQRKIMKRSLGRKSTAPPAPRMGRKEGQGNSDSDQ 540
KIQTQKTKPRGLGGDAGTADGRGRTLQRKIMKRSLGRKSTAPPAPRMGRKEGQGNSDSDQ
Sbjct: 481 KIQTQKTKPRGLGGDAGTADGRGRTLQRKIMKRSLGRKSTAPPAPRMGRKEGQGNSDSDQ 540
Query: 541 PGPKKKFKAPQSKALAASFSEGKEVRTVPKNLGLSACKGACPSSAKEEPRHREPLTQEAG 600
PGPKKKFKAPQSKALAASFSEGKEVRTVPKNLGLSACKGACPSSAKEEPRHREPLTQEAG
Sbjct: 541 PGPKKKFKAPQSKALAASFSEGKEVRTVPKNLGLSACKGACPSSAKEEPRHREPLTQEAG 600
Query: 601 SVPLEDEASSDLDLEQLMEDVGRELGQSGELQHSNSDGEDFPVALFGK 648
SVPLEDEASSDLDLEQLMEDVGRELGQSGELQHSNSDGEDFPVALFGK
Sbjct: 601 SVPLEDEASSDLDLEQLMEDVGRELGQSGELQHSNSDGEDFPVALFGK 648
>gi|94536776 zinc finger, CW type with PWWP domain 2 [Homo sapiens]
Length = 356
Score = 79.3 bits (194), Expect = 1e-14
Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 255 VWVQCSFPNCGKWRRLCGNIDPSVLPDN-WSCDQNTDVQYNRCDIPEETWTGLES----- 308
VWVQC NC KWR L V D W C NTD +YN C I EE +
Sbjct: 29 VWVQCENENCLKWRLLSSEDSAKVDHDEPWYCFMNTDSRYNNCSISEEDFPEESQLHQCG 88
Query: 309 -DVAYASYIPGSIIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYHVTFFGETV 367
+ Y+ GS++ K +P WPG++ D G+Y + D +YH+ F G+
Sbjct: 89 FKIVYSQLPLGSLVLVKLQNWPSWPGILCPDRFKGKYVTYDP--DGNVEEYHIEFLGDPH 146
Query: 368 SRAWIPVNMLKNF 380
SR+WI + ++
Sbjct: 147 SRSWIKATFVGHY 159
>gi|19913356 Wolf-Hirschhorn syndrome candidate 1 protein isoform 3
[Homo sapiens]
Length = 647
Score = 65.5 bits (158), Expect = 1e-10
Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 19/193 (9%)
Query: 304 TGLESDVAYASYIPGSIIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYHVTFF 363
TG + D Y G ++W+K GYPWWP M+ +DP L Y S +YHV FF
Sbjct: 210 TGRDKD-HLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKS-ARQYHVQFF 267
Query: 364 GETVSRAWIPVNML------KNFQELSLE-----------LSVMKKRRNDCSQKLGVALM 406
G+ RAWI L F++L E + ++K + + ++
Sbjct: 268 GDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQAPTKAEKIKLLKPISGKLRAQWEMGIV 327
Query: 407 MAQEAEQISIQERVNLFGFWSRFNGSNSNGERKDLQLSGLNSPGSCLEKKEKEEELEKEE 466
A+EA +S++ER F F + + N + S G E EE +
Sbjct: 328 QAEEAASMSVEERKAKFTFLYVGDQLHLNPQVAKEAGIAAESLGEMAESSGVSEEAAENP 387
Query: 467 GEKTDPILPIRKR 479
+ +P+++R
Sbjct: 388 KSVREECIPMKRR 400
>gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 65.5 bits (158), Expect = 1e-10
Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 19/193 (9%)
Query: 304 TGLESDVAYASYIPGSIIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYHVTFF 363
TG + D Y G ++W+K GYPWWP M+ +DP L Y S +YHV FF
Sbjct: 210 TGRDKD-HLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKS-ARQYHVQFF 267
Query: 364 GETVSRAWIPVNML------KNFQELSLE-----------LSVMKKRRNDCSQKLGVALM 406
G+ RAWI L F++L E + ++K + + ++
Sbjct: 268 GDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQAPTKAEKIKLLKPISGKLRAQWEMGIV 327
Query: 407 MAQEAEQISIQERVNLFGFWSRFNGSNSNGERKDLQLSGLNSPGSCLEKKEKEEELEKEE 466
A+EA +S++ER F F + + N + S G E EE +
Sbjct: 328 QAEEAASMSVEERKAKFTFLYVGDQLHLNPQVAKEAGIAAESLGEMAESSGVSEEAAENP 387
Query: 467 GEKTDPILPIRKR 479
+ +P+++R
Sbjct: 388 KSVREECIPMKRR 400
>gi|6594683 Wolf-Hirschhorn syndrome candidate 1 protein isoform 4
[Homo sapiens]
Length = 629
Score = 65.5 bits (158), Expect = 1e-10
Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 19/193 (9%)
Query: 304 TGLESDVAYASYIPGSIIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYHVTFF 363
TG + D Y G ++W+K GYPWWP M+ +DP L Y S +YHV FF
Sbjct: 210 TGRDKD-HLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKS-ARQYHVQFF 267
Query: 364 GETVSRAWIPVNML------KNFQELSLE-----------LSVMKKRRNDCSQKLGVALM 406
G+ RAWI L F++L E + ++K + + ++
Sbjct: 268 GDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQAPTKAEKIKLLKPISGKLRAQWEMGIV 327
Query: 407 MAQEAEQISIQERVNLFGFWSRFNGSNSNGERKDLQLSGLNSPGSCLEKKEKEEELEKEE 466
A+EA +S++ER F F + + N + S G E EE +
Sbjct: 328 QAEEAASMSVEERKAKFTFLYVGDQLHLNPQVAKEAGIAAESLGEMAESSGVSEEAAENP 387
Query: 467 GEKTDPILPIRKR 479
+ +P+++R
Sbjct: 388 KSVREECIPMKRR 400
>gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 65.5 bits (158), Expect = 1e-10
Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 19/193 (9%)
Query: 304 TGLESDVAYASYIPGSIIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYHVTFF 363
TG + D Y G ++W+K GYPWWP M+ +DP L Y S +YHV FF
Sbjct: 210 TGRDKD-HLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKS-ARQYHVQFF 267
Query: 364 GETVSRAWIPVNML------KNFQELSLE-----------LSVMKKRRNDCSQKLGVALM 406
G+ RAWI L F++L E + ++K + + ++
Sbjct: 268 GDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQAPTKAEKIKLLKPISGKLRAQWEMGIV 327
Query: 407 MAQEAEQISIQERVNLFGFWSRFNGSNSNGERKDLQLSGLNSPGSCLEKKEKEEELEKEE 466
A+EA +S++ER F F + + N + S G E EE +
Sbjct: 328 QAEEAASMSVEERKAKFTFLYVGDQLHLNPQVAKEAGIAAESLGEMAESSGVSEEAAENP 387
Query: 467 GEKTDPILPIRKR 479
+ +P+++R
Sbjct: 388 KSVREECIPMKRR 400
>gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 65.5 bits (158), Expect = 1e-10
Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 19/193 (9%)
Query: 304 TGLESDVAYASYIPGSIIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYHVTFF 363
TG + D Y G ++W+K GYPWWP M+ +DP L Y S +YHV FF
Sbjct: 210 TGRDKD-HLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKS-ARQYHVQFF 267
Query: 364 GETVSRAWIPVNML------KNFQELSLE-----------LSVMKKRRNDCSQKLGVALM 406
G+ RAWI L F++L E + ++K + + ++
Sbjct: 268 GDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQAPTKAEKIKLLKPISGKLRAQWEMGIV 327
Query: 407 MAQEAEQISIQERVNLFGFWSRFNGSNSNGERKDLQLSGLNSPGSCLEKKEKEEELEKEE 466
A+EA +S++ER F F + + N + S G E EE +
Sbjct: 328 QAEEAASMSVEERKAKFTFLYVGDQLHLNPQVAKEAGIAAESLGEMAESSGVSEEAAENP 387
Query: 467 GEKTDPILPIRKR 479
+ +P+++R
Sbjct: 388 KSVREECIPMKRR 400
>gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 65.5 bits (158), Expect = 1e-10
Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 19/193 (9%)
Query: 304 TGLESDVAYASYIPGSIIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYHVTFF 363
TG + D Y G ++W+K GYPWWP M+ +DP L Y S +YHV FF
Sbjct: 210 TGRDKD-HLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKS-ARQYHVQFF 267
Query: 364 GETVSRAWIPVNML------KNFQELSLE-----------LSVMKKRRNDCSQKLGVALM 406
G+ RAWI L F++L E + ++K + + ++
Sbjct: 268 GDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQAPTKAEKIKLLKPISGKLRAQWEMGIV 327
Query: 407 MAQEAEQISIQERVNLFGFWSRFNGSNSNGERKDLQLSGLNSPGSCLEKKEKEEELEKEE 466
A+EA +S++ER F F + + N + S G E EE +
Sbjct: 328 QAEEAASMSVEERKAKFTFLYVGDQLHLNPQVAKEAGIAAESLGEMAESSGVSEEAAENP 387
Query: 467 GEKTDPILPIRKR 479
+ +P+++R
Sbjct: 388 KSVREECIPMKRR 400
>gi|145553976 zinc finger, CW type with coiled-coil domain 2 isoform
a [Homo sapiens]
Length = 937
Score = 59.3 bits (142), Expect = 1e-08
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 256 WVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEE 301
WVQC C KWR+L G IDPS+LP W C N+ +Y RC +PEE
Sbjct: 426 WVQCD--ECLKWRKLPGKIDPSMLPARWFCYYNSHPKYRRCSVPEE 469
>gi|145553971 zinc finger, CW type with coiled-coil domain 2 isoform
b [Homo sapiens]
Length = 900
Score = 59.3 bits (142), Expect = 1e-08
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 256 WVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEE 301
WVQC C KWR+L G IDPS+LP W C N+ +Y RC +PEE
Sbjct: 426 WVQCD--ECLKWRKLPGKIDPSMLPARWFCYYNSHPKYRRCSVPEE 469
>gi|4504191 mutS homolog 6 [Homo sapiens]
Length = 1360
Score = 53.1 bits (126), Expect = 8e-07
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 305 GLESDVAYAS-----YIPGSIIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYH 359
GL VA A+ + PG ++WAK GYPWWP ++ + P G + + H
Sbjct: 75 GLRRSVAPAAPTSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFI----REKGKSVRVH 130
Query: 360 VTFFGETVSRAWIPVNMLKNF 380
V FF ++ +R W+ +LK +
Sbjct: 131 VQFFDDSPTRGWVSKRLLKPY 151
>gi|13699811 WHSC1L1 protein isoform long [Homo sapiens]
Length = 1437
Score = 52.8 bits (125), Expect = 1e-06
Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 38/229 (16%)
Query: 215 EKTQGGHEHRQEDRLKKTVQDHSQIRDQQKGEISGFGQCLVWVQCSFPNCGKWRRLCGNI 274
E T+ HE R+E R K D S+ +++ +I ++ N R +
Sbjct: 184 EHTKSKHESRKEKRKKSNKHDSSRSEERKSHKIPK-------LEPEEQNRPNERVDTVSE 236
Query: 275 DPSVLPDNWSCDQNTDVQYNRCDIPE-ETWTGLESDVAYASYIPGSIIWAKQYGYPWWPG 333
P P + VQ +P E TG++ V G ++W+K YPWWP
Sbjct: 237 KPREEP---VLKEEAPVQPILSSVPTTEVSTGVKFQV-------GDLVWSKVGTYPWWPC 286
Query: 334 MIESDPDLGEYFLFTSHLDSLPSKYHVTFFGETVSRAWIPVNML------KNFQELSLEL 387
M+ SDP L + T +YHV FF RAW+ + K ++EL E
Sbjct: 287 MVSSDPQLE---VHTKINTRGAREYHVQFFSNQPERAWVHEKRVREYKGHKQYEELLAEA 343
Query: 388 S-----------VMKKRRNDCSQKLGVALMMAQEAEQISIQERVNLFGF 425
+ + K R + + + A++A +++ +ER+ + F
Sbjct: 344 TKQASNHSEKQKIRKPRPQRERAQWDIGIAHAEKALKMTREERIEQYTF 392
>gi|13699813 WHSC1L1 protein isoform short [Homo sapiens]
Length = 645
Score = 52.8 bits (125), Expect = 1e-06
Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 38/229 (16%)
Query: 215 EKTQGGHEHRQEDRLKKTVQDHSQIRDQQKGEISGFGQCLVWVQCSFPNCGKWRRLCGNI 274
E T+ HE R+E R K D S+ +++ +I ++ N R +
Sbjct: 184 EHTKSKHESRKEKRKKSNKHDSSRSEERKSHKIPK-------LEPEEQNRPNERVDTVSE 236
Query: 275 DPSVLPDNWSCDQNTDVQYNRCDIPE-ETWTGLESDVAYASYIPGSIIWAKQYGYPWWPG 333
P P + VQ +P E TG++ V G ++W+K YPWWP
Sbjct: 237 KPREEP---VLKEEAPVQPILSSVPTTEVSTGVKFQV-------GDLVWSKVGTYPWWPC 286
Query: 334 MIESDPDLGEYFLFTSHLDSLPSKYHVTFFGETVSRAWIPVNML------KNFQELSLEL 387
M+ SDP L + T +YHV FF RAW+ + K ++EL E
Sbjct: 287 MVSSDPQLE---VHTKINTRGAREYHVQFFSNQPERAWVHEKRVREYKGHKQYEELLAEA 343
Query: 388 S-----------VMKKRRNDCSQKLGVALMMAQEAEQISIQERVNLFGF 425
+ + K R + + + A++A +++ +ER+ + F
Sbjct: 344 TKQASNHSEKQKIRKPRPQRERAQWDIGIAHAEKALKMTREERIEQYTF 392
>gi|28872812 MORC family CW-type zinc finger 3 [Homo sapiens]
Length = 939
Score = 48.5 bits (114), Expect = 2e-05
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 256 WVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEE 301
WVQC C KWR+L +D LP+ W C N D Q+ C++PEE
Sbjct: 410 WVQCDA--CLKWRKLPDGMDQ--LPEKWYCSNNPDPQFRNCEVPEE 451
>gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo
sapiens]
Length = 1135
Score = 46.6 bits (109), Expect = 7e-05
Identities = 71/333 (21%), Positives = 124/333 (37%), Gaps = 60/333 (18%)
Query: 317 PGSIIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYHVTFFGETVSRAWIPVNM 376
P ++WAK G+P+WP D D + FFG+ RAW+P+N
Sbjct: 272 PHPLVWAKLKGFPFWPAKALRDKD---------------GQVDARFFGQH-DRAWVPIN- 314
Query: 377 LKNFQELSLELSVMKKRRNDCSQKLGVALMMAQEAEQISIQERVNLFGFWSRFNGSNSNG 436
N +S E+ K+ ++ + + M E +I+ + +F + S F +
Sbjct: 315 --NCYLMSKEIPFSVKK----TKSIFNSAMQEMEVYVENIRRKFGVFNY-SPFRTPYTPN 367
Query: 437 ERKDLQLSGLNSPGSCLEKKEKEEELEKEEGEKTDPILPIRK---------RVKIQTQKT 487
+ + L N P + K +K+E+++ P + + K R+ +
Sbjct: 368 SQYQMLLDPTN-PSAGTAKIDKQEKVKLNFDMTASPKILMSKPVLSGGTGRRISLSDMPR 426
Query: 488 KPRGLGGDAGTADGRGRTLQRKIMKRSLGR---------KSTAPPAPRMGRKEGQGNSDS 538
P T + ++K KSTA PA K GQ S S
Sbjct: 427 SPMSTNSSVHTGSDVEQDAEKKATSSHFSASEESMDFLDKSTASPA---STKTGQAGSLS 483
Query: 539 DQPGPKKKFKAPQSKALAASFSEGKEVRTVPKNLGLSACKGACPSSAKEEPRHREPLTQE 598
P P +PQ A + ++ + T L L+ + KE E + Q+
Sbjct: 484 GSPKP----FSPQLSAPITTKTD--KTSTTGSILNLNLDRSKAEMDLKE---LSESVQQQ 534
Query: 599 AGSVPL-----EDEASSDLDLEQLMEDVGRELG 626
+ VPL + + L+L++ +E +LG
Sbjct: 535 STPVPLISPKRQIRSRFQLNLDKTIESCKAQLG 567
>gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo
sapiens]
Length = 1188
Score = 46.6 bits (109), Expect = 7e-05
Identities = 71/333 (21%), Positives = 124/333 (37%), Gaps = 60/333 (18%)
Query: 317 PGSIIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYHVTFFGETVSRAWIPVNM 376
P ++WAK G+P+WP D D + FFG+ RAW+P+N
Sbjct: 297 PHPLVWAKLKGFPFWPAKALRDKD---------------GQVDARFFGQH-DRAWVPIN- 339
Query: 377 LKNFQELSLELSVMKKRRNDCSQKLGVALMMAQEAEQISIQERVNLFGFWSRFNGSNSNG 436
N +S E+ K+ ++ + + M E +I+ + +F + S F +
Sbjct: 340 --NCYLMSKEIPFSVKK----TKSIFNSAMQEMEVYVENIRRKFGVFNY-SPFRTPYTPN 392
Query: 437 ERKDLQLSGLNSPGSCLEKKEKEEELEKEEGEKTDPILPIRK---------RVKIQTQKT 487
+ + L N P + K +K+E+++ P + + K R+ +
Sbjct: 393 SQYQMLLDPTN-PSAGTAKIDKQEKVKLNFDMTASPKILMSKPVLSGGTGRRISLSDMPR 451
Query: 488 KPRGLGGDAGTADGRGRTLQRKIMKRSLGR---------KSTAPPAPRMGRKEGQGNSDS 538
P T + ++K KSTA PA K GQ S S
Sbjct: 452 SPMSTNSSVHTGSDVEQDAEKKATSSHFSASEESMDFLDKSTASPA---STKTGQAGSLS 508
Query: 539 DQPGPKKKFKAPQSKALAASFSEGKEVRTVPKNLGLSACKGACPSSAKEEPRHREPLTQE 598
P P +PQ A + ++ + T L L+ + KE E + Q+
Sbjct: 509 GSPKP----FSPQLSAPITTKTD--KTSTTGSILNLNLDRSKAEMDLKE---LSESVQQQ 559
Query: 599 AGSVPL-----EDEASSDLDLEQLMEDVGRELG 626
+ VPL + + L+L++ +E +LG
Sbjct: 560 STPVPLISPKRQIRSRFQLNLDKTIESCKAQLG 592
>gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo
sapiens]
Length = 1160
Score = 46.6 bits (109), Expect = 7e-05
Identities = 71/333 (21%), Positives = 124/333 (37%), Gaps = 60/333 (18%)
Query: 317 PGSIIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYHVTFFGETVSRAWIPVNM 376
P ++WAK G+P+WP D D + FFG+ RAW+P+N
Sbjct: 297 PHPLVWAKLKGFPFWPAKALRDKD---------------GQVDARFFGQH-DRAWVPIN- 339
Query: 377 LKNFQELSLELSVMKKRRNDCSQKLGVALMMAQEAEQISIQERVNLFGFWSRFNGSNSNG 436
N +S E+ K+ ++ + + M E +I+ + +F + S F +
Sbjct: 340 --NCYLMSKEIPFSVKK----TKSIFNSAMQEMEVYVENIRRKFGVFNY-SPFRTPYTPN 392
Query: 437 ERKDLQLSGLNSPGSCLEKKEKEEELEKEEGEKTDPILPIRK---------RVKIQTQKT 487
+ + L N P + K +K+E+++ P + + K R+ +
Sbjct: 393 SQYQMLLDPTN-PSAGTAKIDKQEKVKLNFDMTASPKILMSKPVLSGGTGRRISLSDMPR 451
Query: 488 KPRGLGGDAGTADGRGRTLQRKIMKRSLGR---------KSTAPPAPRMGRKEGQGNSDS 538
P T + ++K KSTA PA K GQ S S
Sbjct: 452 SPMSTNSSVHTGSDVEQDAEKKATSSHFSASEESMDFLDKSTASPA---STKTGQAGSLS 508
Query: 539 DQPGPKKKFKAPQSKALAASFSEGKEVRTVPKNLGLSACKGACPSSAKEEPRHREPLTQE 598
P P +PQ A + ++ + T L L+ + KE E + Q+
Sbjct: 509 GSPKP----FSPQLSAPITTKTD--KTSTTGSILNLNLDRSKAEMDLKE---LSESVQQQ 559
Query: 599 AGSVPL-----EDEASSDLDLEQLMEDVGRELG 626
+ VPL + + L+L++ +E +LG
Sbjct: 560 STPVPLISPKRQIRSRFQLNLDKTIESCKAQLG 592
>gi|27477095 nuclear receptor binding SET domain protein 1 isoform a
[Homo sapiens]
Length = 2427
Score = 44.3 bits (103), Expect = 4e-04
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
Query: 286 DQNTDVQYNRCDIPEETWTGLESDVAYAS---------YIPGSIIWAKQYGYPWWPGMIE 336
D +T N ++P + + ++ + Y G +IWAK PWWP I
Sbjct: 14 DSSTSTLGNMLELPGTSSSSTSQELPFCQPKKKSTPLKYEVGDLIWAKFKRRPWWPCRIC 73
Query: 337 SDPDLGEYFLFTSHLDSLPSKYHVTFFGETVSRAWIPVNMLKNFQ--ELSLELSVMKKR 393
SDP + + +Y+V FG+ RAW+ + F+ EL V+++R
Sbjct: 74 SDPLINTHSKMKVSNRRPYRQYYVEAFGDPSERAWVAGKAIVMFEGRHQFEELPVLRRR 132
>gi|19923586 nuclear receptor binding SET domain protein 1 isoform b
[Homo sapiens]
Length = 2696
Score = 44.3 bits (103), Expect = 4e-04
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
Query: 286 DQNTDVQYNRCDIPEETWTGLESDVAYAS---------YIPGSIIWAKQYGYPWWPGMIE 336
D +T N ++P + + ++ + Y G +IWAK PWWP I
Sbjct: 283 DSSTSTLGNMLELPGTSSSSTSQELPFCQPKKKSTPLKYEVGDLIWAKFKRRPWWPCRIC 342
Query: 337 SDPDLGEYFLFTSHLDSLPSKYHVTFFGETVSRAWIPVNMLKNFQ--ELSLELSVMKKR 393
SDP + + +Y+V FG+ RAW+ + F+ EL V+++R
Sbjct: 343 SDPLINTHSKMKVSNRRPYRQYYVEAFGDPSERAWVAGKAIVMFEGRHQFEELPVLRRR 401
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 43.9 bits (102), Expect = 5e-04
Identities = 51/230 (22%), Positives = 100/230 (43%), Gaps = 23/230 (10%)
Query: 9 EECGKGPKRIFAPPAQKSYSLLPCSPNSPKEETPGISSP--ETEARISLPKASLKKKEEK 66
EE GK P +P +K S + SP K ++P SP E +++ + K K++EEK
Sbjct: 649 EEKGKSPVPK-SPVEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQKEEEEK 707
Query: 67 ATMKNVPSREQEKKRKAQINKQAEKKEKEKSSLTNAEFEEIVQIVLQKSLQECLGMGSGL 126
+K P +E++ ++K + K +K+K +S + E+V I + L
Sbjct: 708 -EVKEAP-KEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVH--------L 757
Query: 127 DFAETSCAQPVVSTQSDKEPGITASATDTDNANGEEVPHTQEISVSWEGEAAPEI--RTS 184
+ +P+ + ++ G + + + G + ++I+V+ E E E+ T
Sbjct: 758 EKETKEEGKPLQQEKEKEKAGGEGGSEEEGSDKGAKGSRKEDIAVNGEVEGKEEVEQETK 817
Query: 185 KLGQPDPAPSKKKSNRLTLSKRKKEAHEKVEKTQGGHEHRQEDRLKKTVQ 234
+ G +N L LS ++ +GG + ++ + KTV+
Sbjct: 818 EKGSGREEEKGVVTNGLDLS--------PADEKKGGDKSEEKVVVTKTVE 859
Score = 41.2 bits (95), Expect = 0.003
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 20 APPAQKSYSLLPCSPNSPKEETPGISSP-ETEARISLPKASLKKK----------EEKAT 68
+P +K S +P SP K ++P SP E + + +PK+ +++K EEKA
Sbjct: 620 SPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVEEKAK 679
Query: 69 MKNVPSREQEKKRKAQINKQAEKKEKEKSSLTNAEFEEIVQ 109
S +E K KA++ K E+KE+E+ + A EE V+
Sbjct: 680 SPVPKSPVEEAKSKAEVGK-GEQKEEEEKEVKEAPKEEKVE 719
Score = 30.4 bits (67), Expect = 5.3
Identities = 39/191 (20%), Positives = 80/191 (41%), Gaps = 8/191 (4%)
Query: 454 EKKEKEEELEKEEGEKTDPILPIRKRVKIQTQKTKPRGLGGDAGTADGRGRTLQRKIMKR 513
E++ +EEE E++EG K+D + ++K + G+ A+ G + K K+
Sbjct: 529 EEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGET-EAEAEGEEAEAKEEKK 587
Query: 514 SLGR-KSTAPPAPRMGRKEGQGNSDSDQPGPKKKFKAPQSKALAASFSEGKEVRTVPKNL 572
+ + A + + + + P PK + + S E K VPK+
Sbjct: 588 VEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSP 647
Query: 573 GLSACKGACPSSAKEEPRHREPLTQEAGSVPLEDEASSDLDLEQLMEDVGR-ELGQSGEL 631
K P S EE + + P+++ P+E++A S + + E + E+G+ +
Sbjct: 648 VEEKGKSPVPKSPVEE-KGKSPVSKS----PVEEKAKSPVPKSPVEEAKSKAEVGKGEQK 702
Query: 632 QHSNSDGEDFP 642
+ + ++ P
Sbjct: 703 EEEEKEVKEAP 713
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 43.9 bits (102), Expect = 5e-04
Identities = 51/230 (22%), Positives = 100/230 (43%), Gaps = 23/230 (10%)
Query: 9 EECGKGPKRIFAPPAQKSYSLLPCSPNSPKEETPGISSP--ETEARISLPKASLKKKEEK 66
EE GK P +P +K S + SP K ++P SP E +++ + K K++EEK
Sbjct: 273 EEKGKSPVPK-SPVEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQKEEEEK 331
Query: 67 ATMKNVPSREQEKKRKAQINKQAEKKEKEKSSLTNAEFEEIVQIVLQKSLQECLGMGSGL 126
+K P +E++ ++K + K +K+K +S + E+V I + L
Sbjct: 332 -EVKEAP-KEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVH--------L 381
Query: 127 DFAETSCAQPVVSTQSDKEPGITASATDTDNANGEEVPHTQEISVSWEGEAAPEI--RTS 184
+ +P+ + ++ G + + + G + ++I+V+ E E E+ T
Sbjct: 382 EKETKEEGKPLQQEKEKEKAGGEGGSEEEGSDKGAKGSRKEDIAVNGEVEGKEEVEQETK 441
Query: 185 KLGQPDPAPSKKKSNRLTLSKRKKEAHEKVEKTQGGHEHRQEDRLKKTVQ 234
+ G +N L LS ++ +GG + ++ + KTV+
Sbjct: 442 EKGSGREEEKGVVTNGLDLS--------PADEKKGGDKSEEKVVVTKTVE 483
Score = 41.2 bits (95), Expect = 0.003
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 20 APPAQKSYSLLPCSPNSPKEETPGISSP-ETEARISLPKASLKKK----------EEKAT 68
+P +K S +P SP K ++P SP E + + +PK+ +++K EEKA
Sbjct: 244 SPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPVEEKAK 303
Query: 69 MKNVPSREQEKKRKAQINKQAEKKEKEKSSLTNAEFEEIVQ 109
S +E K KA++ K E+KE+E+ + A EE V+
Sbjct: 304 SPVPKSPVEEAKSKAEVGK-GEQKEEEEKEVKEAPKEEKVE 343
Score = 30.4 bits (67), Expect = 5.3
Identities = 39/191 (20%), Positives = 80/191 (41%), Gaps = 8/191 (4%)
Query: 454 EKKEKEEELEKEEGEKTDPILPIRKRVKIQTQKTKPRGLGGDAGTADGRGRTLQRKIMKR 513
E++ +EEE E++EG K+D + ++K + G+ A+ G + K K+
Sbjct: 153 EEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGET-EAEAEGEEAEAKEEKK 211
Query: 514 SLGR-KSTAPPAPRMGRKEGQGNSDSDQPGPKKKFKAPQSKALAASFSEGKEVRTVPKNL 572
+ + A + + + + P PK + + S E K VPK+
Sbjct: 212 VEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSP 271
Query: 573 GLSACKGACPSSAKEEPRHREPLTQEAGSVPLEDEASSDLDLEQLMEDVGR-ELGQSGEL 631
K P S EE + + P+++ P+E++A S + + E + E+G+ +
Sbjct: 272 VEEKGKSPVPKSPVEE-KGKSPVSKS----PVEEKAKSPVPKSPVEEAKSKAEVGKGEQK 326
Query: 632 QHSNSDGEDFP 642
+ + ++ P
Sbjct: 327 EEEEKEVKEAP 337
>gi|157266334 tubby like protein 1 [Homo sapiens]
Length = 542
Score = 43.1 bits (100), Expect = 8e-04
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 21/151 (13%)
Query: 454 EKKEKEEELEKEEGEKTDPIL-----PIRKR--VKIQTQKTKPRGLGGDAGTADGRGRTL 506
E++E EE+ E+E EK + IL P+R++ ++ ++ K +G GD G+ D + L
Sbjct: 120 EEEEDEEDEEEEAEEKKEKILLPPKKPLREKSSADLKERRAKAQGPRGDLGSPDPPPKPL 179
Query: 507 QRKIMKRSLGRKSTAPPAPRMGRKEGQGNSDSDQPG-PKKKFKAPQSKALAASFSEGKEV 565
+ + + G + R +K+G G +D D G P K+P + L S K+
Sbjct: 180 RVRNKEAPAGEGTKM----RKTKKKGSGEADKDPSGSPASARKSPAAMFLVGEGSPDKKA 235
Query: 566 RTVPKNLGLSACKGACPSSAKEEPRHREPLT 596
KG + KEE E T
Sbjct: 236 LKK---------KGTPKGARKEEEEEEEAAT 257
>gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Homo
sapiens]
Length = 1645
Score = 41.2 bits (95), Expect = 0.003
Identities = 66/269 (24%), Positives = 101/269 (37%), Gaps = 50/269 (18%)
Query: 14 GPKRIFAPPAQKSYSLLPCSPNSP-KEETPGISSPETEARISL-------PKASLKKKEE 65
GPK + +S+ PNSP K E IS ++E SL PK+ K E
Sbjct: 82 GPKDLGLVLRDQSHCKAKKFPNSPVKAEKATISQAKSEKATSLQAKAEKSPKSPNSVKAE 141
Query: 66 KATM-----KNVPSR--EQEKKRKAQINKQAEKKEKEK------SSLTNAEFEEIVQIVL 112
KA+ + VPS E EK + +K E ++ SS T+ + I +
Sbjct: 142 KASSYQMKSEKVPSSPAEAEKGPSLLLKDMRQKTELQQIGKKIPSSFTSVDKVNIEAVGG 201
Query: 113 QKSLQECLGMGSGLDFAETSCAQPVVSTQSDKEPGITASATD--------TDNANGEEVP 164
+K C S + +C D GI + D ++ N E+
Sbjct: 202 EK----CALQNSPRSQKQQTCTDNT-GDSDDSASGIEDVSDDLSKMKNDESNKENSSEMD 256
Query: 165 HTQEISVSWEGEAAPEIRTSKLGQPDPAPSKKKSNRLTLSKRKKEAHE----------KV 214
+ + +V E PE R LG ++ + L KR E +
Sbjct: 257 YLENATVIDESALTPEQR---LGLKQAEERLERDHIFRLEKRSPEYTNCRYLCKLCLIHI 313
Query: 215 EKTQGGHEHRQEDRLKKTV---QDHSQIR 240
E QG H+H +E R KK + Q+ S++R
Sbjct: 314 ENIQGAHKHIKEKRHKKNILEKQEESELR 342
>gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Homo
sapiens]
Length = 1644
Score = 41.2 bits (95), Expect = 0.003
Identities = 66/269 (24%), Positives = 101/269 (37%), Gaps = 50/269 (18%)
Query: 14 GPKRIFAPPAQKSYSLLPCSPNSP-KEETPGISSPETEARISL-------PKASLKKKEE 65
GPK + +S+ PNSP K E IS ++E SL PK+ K E
Sbjct: 82 GPKDLGLVLRDQSHCKAKKFPNSPVKAEKATISQAKSEKATSLQAKAEKSPKSPNSVKAE 141
Query: 66 KATM-----KNVPSR--EQEKKRKAQINKQAEKKEKEK------SSLTNAEFEEIVQIVL 112
KA+ + VPS E EK + +K E ++ SS T+ + I +
Sbjct: 142 KASSYQMKSEKVPSSPAEAEKGPSLLLKDMRQKTELQQIGKKIPSSFTSVDKVNIEAVGG 201
Query: 113 QKSLQECLGMGSGLDFAETSCAQPVVSTQSDKEPGITASATD--------TDNANGEEVP 164
+K C S + +C D GI + D ++ N E+
Sbjct: 202 EK----CALQNSPRSQKQQTCTDNT-GDSDDSASGIEDVSDDLSKMKNDESNKENSSEMD 256
Query: 165 HTQEISVSWEGEAAPEIRTSKLGQPDPAPSKKKSNRLTLSKRKKEAHE----------KV 214
+ + +V E PE R LG ++ + L KR E +
Sbjct: 257 YLENATVIDESALTPEQR---LGLKQAEERLERDHIFRLEKRSPEYTNCRYLCKLCLIHI 313
Query: 215 EKTQGGHEHRQEDRLKKTV---QDHSQIR 240
E QG H+H +E R KK + Q+ S++R
Sbjct: 314 ENIQGAHKHIKEKRHKKNILEKQEESELR 342
>gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Homo
sapiens]
Length = 1640
Score = 41.2 bits (95), Expect = 0.003
Identities = 66/269 (24%), Positives = 101/269 (37%), Gaps = 50/269 (18%)
Query: 14 GPKRIFAPPAQKSYSLLPCSPNSP-KEETPGISSPETEARISL-------PKASLKKKEE 65
GPK + +S+ PNSP K E IS ++E SL PK+ K E
Sbjct: 82 GPKDLGLVLRDQSHCKAKKFPNSPVKAEKATISQAKSEKATSLQAKAEKSPKSPNSVKAE 141
Query: 66 KATM-----KNVPSR--EQEKKRKAQINKQAEKKEKEK------SSLTNAEFEEIVQIVL 112
KA+ + VPS E EK + +K E ++ SS T+ + I +
Sbjct: 142 KASSYQMKSEKVPSSPAEAEKGPSLLLKDMRQKTELQQIGKKIPSSFTSVDKVNIEAVGG 201
Query: 113 QKSLQECLGMGSGLDFAETSCAQPVVSTQSDKEPGITASATD--------TDNANGEEVP 164
+K C S + +C D GI + D ++ N E+
Sbjct: 202 EK----CALQNSPRSQKQQTCTDNT-GDSDDSASGIEDVSDDLSKMKNDESNKENSSEMD 256
Query: 165 HTQEISVSWEGEAAPEIRTSKLGQPDPAPSKKKSNRLTLSKRKKEAHE----------KV 214
+ + +V E PE R LG ++ + L KR E +
Sbjct: 257 YLENATVIDESALTPEQR---LGLKQAEERLERDHIFRLEKRSPEYTNCRYLCKLCLIHI 313
Query: 215 EKTQGGHEHRQEDRLKKTV---QDHSQIR 240
E QG H+H +E R KK + Q+ S++R
Sbjct: 314 ENIQGAHKHIKEKRHKKNILEKQEESELR 342
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 40.8 bits (94), Expect = 0.004
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 14/101 (13%)
Query: 8 KEECGKGPKRIFAPPAQKSYSLLPCSP------NSPKEETPGISSPET------EARISL 55
KEE ++ PP + P +P +S KEE P +P+ E +
Sbjct: 825 KEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEK 884
Query: 56 PKASL--KKKEEKATMKNVPSREQEKKRKAQINKQAEKKEK 94
PK S KKEE K VP+ E+E K ++ + A+ KEK
Sbjct: 885 PKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEK 925
Score = 34.7 bits (78), Expect = 0.28
Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 34/229 (14%)
Query: 4 TLQNKEECGKGPKRIFAPPAQKSYSLLPCSPNSPKEETPGISSPETEARISLPKASLKKK 63
TL K K P + A + SP + ++P + + P+ + KK
Sbjct: 758 TLDVKSPEAKTPAKEEARSPADKFPEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKK 817
Query: 64 EEKATMKNVPSREQEKKRKAQINKQAEKKEKEKSSLTNAEFEEIVQIVLQKSLQECLGMG 123
EE + P +E+EK ++ ++ + +K E+EK+ T E+ + S +E
Sbjct: 818 EEVKS----PVKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEK------KDSKKE----- 862
Query: 124 SGLDFAETSCAQPVVSTQSDKEPGITASATDTDNANGEEVPHTQEI---------SVSWE 174
+ + +P V + KEP + A EE +++ V +
Sbjct: 863 ---EAPKKEAPKPKV--EEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVK 917
Query: 175 GEAAPEIRTS-KLGQPDPA----PSKKKSNRLTLSKRKKEAHEKVEKTQ 218
+A P+ +T +PD A PSK + ++K EK +K +
Sbjct: 918 EDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPE 966
Score = 34.7 bits (78), Expect = 0.28
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 50/201 (24%)
Query: 34 PNSPKEETPGISSPETEARISLPKASLKK--KEEKATMKNVPSREQEKKRKAQINK---- 87
P K + P + E +A + PK KK K+E+A K P + E+K++ + K
Sbjct: 830 PQEVKVKEPPKKAEEEKAPAT-PKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKES 888
Query: 88 --QAEKKEKE-KSSLTNAEFEEIVQIVLQKSLQECLGMGSGLDFAETSCAQPVVSTQ-SD 143
+A+K+E E K + E E ++ +++ A+P T+ +
Sbjct: 889 KVEAKKEEAEDKKKVPTPEKEAPAKVEVKED------------------AKPKEKTEVAK 930
Query: 144 KEPGITASATDTDNANGEEVPHTQEISVSWEGEAAPE---IRTSKLGQPDPAP---SKKK 197
KEP D+A +E E + EAAPE + K +P+ P +K K
Sbjct: 931 KEP---------DDAKAKEPSKPAE-----KKEAAPEKKDTKEEKAKKPEEKPKTEAKAK 976
Query: 198 SNRLTLSKR-KKEAHEKVEKT 217
+ TLSK K EK EK+
Sbjct: 977 EDDKTLSKEPSKPKAEKAEKS 997
Score = 33.5 bits (75), Expect = 0.63
Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 20/203 (9%)
Query: 456 KEKEEELEKEEGEKTDPILPIRKRVKIQTQKTKPRGLGGDAGTADGRGRTLQRKIMKRSL 515
KE + EKE +K + P+++ K Q K K + A +T ++K K+
Sbjct: 804 KEDAKAPEKEIPKKEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEE 863
Query: 516 GRKSTAPPAPRMGR---------KEGQGNSDSDQPGPKKKFKAPQSKALA----ASFSEG 562
K A P P++ KE + + ++ KKK P+ +A A ++
Sbjct: 864 APKKEA-PKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKP 922
Query: 563 KEVRTVPKNL--GLSACKGACPSSAKEEPRHREPLTQEAGSVPLE---DEASSDLDLEQL 617
KE V K A + + P+ KE ++ +E P E EA + D + L
Sbjct: 923 KEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTL 982
Query: 618 MEDVGRELGQSGELQHSNSDGED 640
++ + + E + S++D +D
Sbjct: 983 SKEPSKPKAEKAE-KSSSTDQKD 1004
Score = 32.3 bits (72), Expect = 1.4
Identities = 46/241 (19%), Positives = 90/241 (37%), Gaps = 19/241 (7%)
Query: 13 KGPKRIFAPPAQKSYSLLPCSPNSP-KEETPGISSPETEARISLPKASLKKKEEKATMKN 71
K P++ +P +++ S P SP KEE + ++ + P K EKA
Sbjct: 599 KSPEKAKSPVKEEAKS--PAEAKSPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKAKSPE 656
Query: 72 VPSREQEKKRKAQINKQAEKKEKEKSSL-TNAEFEEIVQIVL-------QKSLQECLGMG 123
+ +K K+ + +A+ EK KS + A+ E + + +K+
Sbjct: 657 KEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEA 716
Query: 124 SGLDFAETSCAQPVVSTQSDKEPGITASATDTDNANGEEVPHTQEISVSWEGEAAPEIRT 183
+ A++ + + + K P + A + A E T ++ EA +
Sbjct: 717 KSPEKAKSPVKEEAKTPEKAKSP-VKEEAKSPEKAKSPEKAKTLDVK---SPEAKTPAKE 772
Query: 184 SKLGQPDPAPSKKKSNRLTLSKRKKEAHEKVEKTQGGHEHRQEDRLKKTVQDHSQIRDQQ 243
D P K KS K + ++ EK + E + K + S +++++
Sbjct: 773 EARSPADKFPEKAKSP----VKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEE 828
Query: 244 K 244
K
Sbjct: 829 K 829
Score = 31.2 bits (69), Expect = 3.1
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 5 LQNKEECGKGPKRIFAPPAQKSYSLLPCSPNSPKEETPGISSPETEARISLPKASLKKKE 64
++ K+E + K++ P + + PKE+T +A+ P +KKE
Sbjct: 890 VEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKE 949
Query: 65 EKATMKNVPSREQEKKRKAQINKQAEKKEKEKSSLTNAE 103
K+ ++EK +K + + E K KE + E
Sbjct: 950 AAPEKKDT---KEEKAKKPEEKPKTEAKAKEDDKTLSKE 985
Score = 30.0 bits (66), Expect = 6.9
Identities = 46/245 (18%), Positives = 89/245 (36%), Gaps = 28/245 (11%)
Query: 8 KEECGKGPKRIFAPPAQKSYSLLPCSPNSPKEETPGISSPETEARISLPKASLKKKEEKA 67
+EE G + +PPA+++ +SPE EA+ + + + E K+
Sbjct: 491 EEEAEGGEEETKSPPAEEA------------------ASPEKEAKSPVKEEAKSPAEAKS 532
Query: 68 TMKNVPSREQEKKRKAQINKQAEKKEKEKSSLTNAEFEEIVQIVLQKSLQECLGMGSGLD 127
K E K + A+++ K + E EE KS ++
Sbjct: 533 PEKEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEA 592
Query: 128 FAETSCAQPVVSTQSDKE----PGITASATDTDNANGEEVPHTQEISVSWEGEA-APEIR 182
+ P + KE P S + + EV ++ + EA +PE
Sbjct: 593 KSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKA 652
Query: 183 TSKLGQPDPAPSKKKSNRLTLSKRKKEAHEKVEKTQGGHEHRQEDRLKKTVQDHSQIRDQ 242
S + +P K KS +K ++A V+ E + ++ K V++ ++ ++
Sbjct: 653 KSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKA-----EAKSPEKAKSPVKEEAKSPEK 707
Query: 243 QKGEI 247
K +
Sbjct: 708 AKSPV 712
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 40.4 bits (93), Expect = 0.005
Identities = 53/251 (21%), Positives = 96/251 (38%), Gaps = 30/251 (11%)
Query: 386 ELSVMKKRRNDCSQKLGVALMMAQEAEQISIQERVNLFGFWSRFNGSNSNGERKDLQLSG 445
+LSV K + DC K G + + + ++E + ++ + S+ ERK
Sbjct: 738 KLSVKHKYKGDCMHKTGDETELHSSEKGLKVEENIQKQSQQTKLS-SDDKTERK------ 790
Query: 446 LNSPGSCLEKKEKEEELEKEEGEKTDPILPIRKRVKIQTQKTKPRGLGGDAGTADGRG-R 504
S + K L K+ ++ I+ + V+ + K K R L + A+ + R
Sbjct: 791 -----SKHRNERKLSVLGKDGKPVSEYIIKTDENVRKENNK-KERRLSAEKTKAEHKSRR 844
Query: 505 TLQRKIMKRSLGRKSTAPPAPRMGRKEGQGNSDSDQPGPKKKFKAPQ--------SKAL- 555
+ KI K SLG K R + D D K + +K+L
Sbjct: 845 SSDSKIQKDSLGSKQHGITLQRRSESYSEDKCDMDSTNMDSNLKPEEVVHKEKRRTKSLL 904
Query: 556 -------AASFSEGKEVRTVPKNLGLSACKGACPSSAKEEPRHREPLTQEAGSVPLEDEA 608
+ S ++GK+V+ V L A K A +E E +++ +ED+
Sbjct: 905 EEKLVLKSKSKTQGKQVKVVETELQEGATKQATTPKPDKEKNTEENDSEKQRKSKVEDKP 964
Query: 609 SSDLDLEQLME 619
+ +E ++E
Sbjct: 965 FEETGVEPVLE 975
Score = 33.1 bits (74), Expect = 0.82
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 38/204 (18%)
Query: 61 KKKEEKATMKNVPSREQEKKRKAQINKQAEKKE---------------------KEKSSL 99
K+K+EK K S++ E +K + KQA++KE KE SL
Sbjct: 336 KEKKEKTEKKFDHSKKSEDTQKVKDEKQAKEKEVESLKLPSEKNSNKAKTVEGTKEDFSL 395
Query: 100 TNAEFEEIVQIVLQKSLQECLGMGSGLDFAETSCAQPVVSTQSDKEPGITASATDTDNAN 159
+++ + + I + S L E + VV++ S +E IT +D + N
Sbjct: 396 IDSDVDGLTDITVSSV------HTSDLSSFEEDTEEEVVTSDSMEEGEIT---SDDEEKN 446
Query: 160 GEEVPHTQEISVSWEGEAAPEIRTSKLGQPDPAPS--KKKSNRLTLSKRK----KEAHEK 213
+ TQ S S EG+ +R + + +P + LT+ +R+ KE E+
Sbjct: 447 KQNKTKTQ-TSDSSEGK-TKSVRHAYVHKPYLYSKYYSDSDDELTVEQRRQSIAKEKEER 504
Query: 214 VEKTQGGHEHRQEDRLKKTVQDHS 237
+ + Q E +E R +K + S
Sbjct: 505 LLRRQINREKLEEKRKQKAEKTKS 528
Score = 29.6 bits (65), Expect = 9.1
Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 34/243 (13%)
Query: 2 MTTLQNKEECGKGPKRIFAPPAQKSYSLLPCSPNSPKEETPGISSPETEARISLPKASLK 61
+ TL +KEE G G AP +K + L T G+ +P A ++ S+
Sbjct: 159 LATLNHKEE-GSGNT---APDDEKPDTSLI---------TQGVPTPGPSANVANDAMSIL 205
Query: 62 KKEEKATMKNVPSREQEKKRKAQINKQAEKK-EKEKSSLTNAEFEEIVQIVLQKSLQECL 120
+ + +R + A+ +++A KK + ++ T+ + E + + K
Sbjct: 206 ETITSLNQEASAARASTETSNAKTSERASKKLPSQPTTDTSTDKERTSEDMADKEKSTAD 265
Query: 121 GMGSGLDFAETSCAQPVVSTQSDKEPGITASATDTDNANGEEVPHTQEISVSWEGEAAPE 180
G GL+ A +S++ + + N E H I ++ + E
Sbjct: 266 SGGEGLETAP----------KSEEFSDLPCPVEEIKNYTKE---HNNLILLN--KDVQQE 310
Query: 181 IRTSKLGQPDPAPSKKKSNRLTLSKRKKEAHEKVEKTQGGHEHRQEDRLKKTVQDHSQIR 240
K D K SN +RKKE K EKT+ +H ++ + V+D Q +
Sbjct: 311 SSEQKNKSTDKGEKKPDSNEK--GERKKE---KKEKTEKKFDHSKKSEDTQKVKDEKQAK 365
Query: 241 DQQ 243
+++
Sbjct: 366 EKE 368
>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
Length = 1564
Score = 40.0 bits (92), Expect = 0.007
Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 14/176 (7%)
Query: 433 NSNGERKDLQLSGLNSPGSCLEKKEKEEELEKEEGEKTDPILPIRKRVKI-----QTQKT 487
+S+ +KD + S ++SP ++ K + +K+ P PI + + + + K
Sbjct: 227 SSSASKKDRKTSAVSSPLLDQQRNSKTNQSKKKGPRTPSPPPPIPEDIALGKKYKEKYKV 286
Query: 488 KPRGLGGDAGTADG--RGRTLQRKIMKRSLGRKSTAPPAPRMGRKEGQGNSDSDQPGPKK 545
K R + T DG RGR +R+ KR R ST+P + +S S Q G
Sbjct: 287 KDR---IEEKTRDGKDRGRDFERQREKRDKPR-STSPAGQHHSPISSRHHSSSSQSGSSI 342
Query: 546 KFKAPQSKALAASFSEGKEVRTVPKNLGLSACKG---ACPSSAKEEPRHREPLTQE 598
+ +P + + T P S + P + PRHR P+ ++
Sbjct: 343 QRHSPSPRRKRTPSPSYQRTLTPPLRRSASPYPSHSLSSPQRKQSPPRHRSPMREK 398
>gi|157738619 smoothelin-like 1 [Homo sapiens]
Length = 512
Score = 40.0 bits (92), Expect = 0.007
Identities = 50/212 (23%), Positives = 82/212 (38%), Gaps = 27/212 (12%)
Query: 436 GERKDLQLSGLNSPGSCLEKKEKEEELEKEEGEKTDPILPIRKRV-KIQTQKTKPRGLGG 494
GE L + S K++ E EL+KE+GEK + + ++ + + K++P+
Sbjct: 86 GEANGLDEVKVESQREAGGKEDAEAELKKEDGEKEETTVGSQEMTGRKEETKSEPKEAEE 145
Query: 495 DAGTADGRGRTLQRKIMKRSLGRKSTAPPAPRMGRKEGQGNSDSDQPGPKKKFKAPQSK- 553
T + + K K G+K+ A +D D+P PK + +K
Sbjct: 146 KESTLASEKQKAEEKEAKPESGQKADA--------------NDRDKPEPKATVEEEDAKT 191
Query: 554 ALAASFSEGKEVRTVPKNLG------LSACKGACPSSAKEEPRHREPLTQEAGSVPLEDE 607
A + KE T PK + K AK EP +EP +E ++E
Sbjct: 192 ASQEETGQRKECSTEPKEKATDEEAKAESQKAVVEDEAKAEP--KEPDGKEEAKHGAKEE 249
Query: 608 ASSDLDLEQLMEDVGRELGQSGELQHSNSDGE 639
A + + E E E G E Q + + E
Sbjct: 250 ADAKEEAEDAEE---AEPGSPSEEQEQDVEKE 278
Score = 29.6 bits (65), Expect = 9.1
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 38 KEETPGISSPETEARISLPKASLKKKEEK-ATMKNVPSREQEKKRKAQINKQAEKKEKEK 96
KEET + S E R K+ K+ EEK +T+ + + +EK+ K + ++A+ +++K
Sbjct: 119 KEETT-VGSQEMTGRKEETKSEPKEAEEKESTLASEKQKAEEKEAKPESGQKADANDRDK 177
>gi|9257180 adducin 2 isoform c [Homo sapiens]
Length = 420
Score = 39.7 bits (91), Expect = 0.009
Identities = 47/188 (25%), Positives = 65/188 (34%), Gaps = 52/188 (27%)
Query: 31 PCSPNSPKEETPG--ISSPETEARISLPKASLKKKEEKATMKNVPSREQEKKRKAQINKQ 88
P P SP + P + SP EA P S K E+ T K S+ +
Sbjct: 281 PEEPGSPAKSAPASPVQSPAKEAETKSPLVSPSKSLEEGTKKTETSKAA--------TTE 332
Query: 89 AEKKEKEKSSLTNAEFEEIVQIVLQKSLQECLGMGSGLDFAETSCAQPVVSTQSDKEPGI 148
E + E + E E+ + +L K L + T+ A V T DK +
Sbjct: 333 PETTQPEGVVVNGREEEQTAEEILSKGLSQM-----------TTSADTDVDTSKDKTESV 381
Query: 149 TASATDTDNANGEEVPHTQEISVSWEGEAAPEIRTSKLGQPDPAPSKKKSNRLTLS-KRK 207
T+ G +PE G P +PSKKK T S +K
Sbjct: 382 TS------------------------GPMSPE------GSPSKSPSKKKKKFRTPSFLKK 411
Query: 208 KEAHEKVE 215
+ EKVE
Sbjct: 412 SKKKEKVE 419
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.128 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,591,051
Number of Sequences: 37866
Number of extensions: 1508998
Number of successful extensions: 12122
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 424
Number of HSP's that attempted gapping in prelim test: 9443
Number of HSP's gapped (non-prelim): 2685
length of query: 648
length of database: 18,247,518
effective HSP length: 109
effective length of query: 539
effective length of database: 14,120,124
effective search space: 7610746836
effective search space used: 7610746836
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.