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Search of human proteins with 94536798
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94536798 high mobility group AT-hook 1-like 4 [Homo sapiens]
(356 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94536798 high mobility group AT-hook 1-like 4 [Homo sapiens] 731 0.0
gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithora... 43 5e-04
gi|145701009 acetylcholinesterase collagen-like tail subunit iso... 42 8e-04
gi|18105018 acetylcholinesterase collagen-like tail subunit isof... 42 8e-04
gi|18105016 acetylcholinesterase collagen-like tail subunit isof... 42 8e-04
gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo s... 40 0.002
gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo ... 40 0.002
gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo ... 40 0.002
gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo s... 40 0.002
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 40 0.003
gi|11415052 retinoid X receptor, beta [Homo sapiens] 40 0.004
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 39 0.005
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ... 39 0.005
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ... 39 0.005
gi|4507347 TBP-associated factor 2 [Homo sapiens] 39 0.005
gi|167234429 zinc finger and BTB domain containing 17 [Homo sapi... 39 0.007
gi|56549694 enabled homolog isoform a [Homo sapiens] 38 0.012
gi|39930375 enabled homolog isoform b [Homo sapiens] 38 0.012
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 38 0.016
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 38 0.016
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 38 0.016
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 38 0.016
gi|33356148 formin-like 1 [Homo sapiens] 38 0.016
gi|239754797 PREDICTED: hypothetical protein [Homo sapiens] 37 0.021
gi|239743415 PREDICTED: hypothetical protein [Homo sapiens] 37 0.021
gi|4504713 insulinoma-associated 1 [Homo sapiens] 37 0.021
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 37 0.027
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 37 0.035
gi|182765442 homeobox A10 isoform a [Homo sapiens] 37 0.035
>gi|94536798 high mobility group AT-hook 1-like 4 [Homo sapiens]
Length = 356
Score = 731 bits (1886), Expect = 0.0
Identities = 356/356 (100%), Positives = 356/356 (100%)
Query: 1 MSKLWRRGSTSGAMEAPEPGEALELSLAGAHGHGVHKKKHKKHKKKHKKKHHQEEDAGPT 60
MSKLWRRGSTSGAMEAPEPGEALELSLAGAHGHGVHKKKHKKHKKKHKKKHHQEEDAGPT
Sbjct: 1 MSKLWRRGSTSGAMEAPEPGEALELSLAGAHGHGVHKKKHKKHKKKHKKKHHQEEDAGPT 60
Query: 61 QPSPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVVDNEEEPMEGVPLEQYR 120
QPSPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVVDNEEEPMEGVPLEQYR
Sbjct: 61 QPSPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVVDNEEEPMEGVPLEQYR 120
Query: 121 AWLDEDSNLSPSPLRDLSGGLGGQEEEEEQRWLDALEKGELDDNGDLKKEINERLLTARQ 180
AWLDEDSNLSPSPLRDLSGGLGGQEEEEEQRWLDALEKGELDDNGDLKKEINERLLTARQ
Sbjct: 121 AWLDEDSNLSPSPLRDLSGGLGGQEEEEEQRWLDALEKGELDDNGDLKKEINERLLTARQ 180
Query: 181 RALLQKARSQPSPMLPLPVAEGCPPPALTEEMLLKREERARKRRLQAARRAEEHKNQTIE 240
RALLQKARSQPSPMLPLPVAEGCPPPALTEEMLLKREERARKRRLQAARRAEEHKNQTIE
Sbjct: 181 RALLQKARSQPSPMLPLPVAEGCPPPALTEEMLLKREERARKRRLQAARRAEEHKNQTIE 240
Query: 241 RLTKTAATSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRP 300
RLTKTAATSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRP
Sbjct: 241 RLTKTAATSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRP 300
Query: 301 SPSGPPPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQMRLGGPEGPGSPLLAT 356
SPSGPPPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQMRLGGPEGPGSPLLAT
Sbjct: 301 SPSGPPPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQMRLGGPEGPGSPLLAT 356
>gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 1 [Homo
sapiens]
Length = 1834
Score = 42.7 bits (99), Expect = 5e-04
Identities = 77/339 (22%), Positives = 125/339 (36%), Gaps = 58/339 (17%)
Query: 17 PEPGEALELSLAGAHGHGVHKKKHKKHKK------------KHKKKHHQEEDAGPTQ--- 61
P P A ++ L A ++K ++H++ + +K+ QE G +
Sbjct: 1388 PPPPSANQIGLPSAQVAAAERRKREEHQRWYEKEKARLEEERERKRREQERKLGQMRTQS 1447
Query: 62 --PSPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVVDNEEEPMEGVPLEQY 119
P+P P ++K + T P TVI E P + E ++ + + +
Sbjct: 1448 LNPAPFSPLTAQQMK--PEKPSTLQRPQETVIRELQPQQQPRTI---ERRDLQYITVSKE 1502
Query: 120 RAWLDEDSNLSPSPL-RDLSGGLGGQEEEEEQRWLDALEKG--ELDDNGDLKKEINERL- 175
L +LSP P RD L E++++ +D L K EL D E ++RL
Sbjct: 1503 E--LSSGDSLSPDPWKRDAKEKL---EKQQQMHIVDMLSKEIQELQSKPDRSAEESDRLR 1557
Query: 176 ---LTARQRALLQKARSQPSP-----------MLPLPVAEG-----CPPPALTEEMLLKR 216
L + + LQ+++ + ML + E PA++ LL+
Sbjct: 1558 KLMLEWQFQKRLQESKQKDEDDEEEEDDDVDTMLIMQRLEAERRARTAMPAISVLDLLQD 1617
Query: 217 EERARKRRLQAAR--------RAEEHKNQTIERLTKTAATSGRGGRGGARGERRGGRAAA 268
EER R+++L+ R R EE + + E TK A R G R
Sbjct: 1618 EERRRQQQLEEMRKREAEDRARQEEERRRQEEERTKRDAEEKRRQEEGYYSRLEAERRRQ 1677
Query: 269 PAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSGPPP 307
R + L PP S P+P PPP
Sbjct: 1678 HDEAARRLLEPEAPGLCRPPLPRDYEPPSPSPAPGAPPP 1716
>gi|145701009 acetylcholinesterase collagen-like tail subunit
isoform III precursor [Homo sapiens]
Length = 421
Score = 42.0 bits (97), Expect = 8e-04
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Query: 250 GRGGRGGARGER--RGGRAAAPAPMVRYCSGAQG-STLSFPPGVPAPTAVSQRPSPSGPP 306
G+ G G +GE G R P R G +G S + PPG P P+ RP P GPP
Sbjct: 176 GQKGEMGPKGEPGIAGHRGPTGRPGKRGKQGQKGDSGVMGPPGKPGPSGQPGRPGPPGPP 235
Query: 307 PRCSVPGCPHPRRYACSRTGQALC--SLQCYRINLQMRLGGPEGPGSPLL 354
P + P R G+ LC ++ + + GP P P++
Sbjct: 236 PAGQLIMGPKGERGFPGPPGRCLCGPTMNVNNPSYGESVYGPSSPRVPVI 285
>gi|18105018 acetylcholinesterase collagen-like tail subunit isoform
II [Homo sapiens]
Length = 445
Score = 42.0 bits (97), Expect = 8e-04
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Query: 250 GRGGRGGARGER--RGGRAAAPAPMVRYCSGAQG-STLSFPPGVPAPTAVSQRPSPSGPP 306
G+ G G +GE G R P R G +G S + PPG P P+ RP P GPP
Sbjct: 200 GQKGEMGPKGEPGIAGHRGPTGRPGKRGKQGQKGDSGVMGPPGKPGPSGQPGRPGPPGPP 259
Query: 307 PRCSVPGCPHPRRYACSRTGQALC--SLQCYRINLQMRLGGPEGPGSPLL 354
P + P R G+ LC ++ + + GP P P++
Sbjct: 260 PAGQLIMGPKGERGFPGPPGRCLCGPTMNVNNPSYGESVYGPSSPRVPVI 309
>gi|18105016 acetylcholinesterase collagen-like tail subunit isoform
I precursor [Homo sapiens]
Length = 455
Score = 42.0 bits (97), Expect = 8e-04
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Query: 250 GRGGRGGARGER--RGGRAAAPAPMVRYCSGAQG-STLSFPPGVPAPTAVSQRPSPSGPP 306
G+ G G +GE G R P R G +G S + PPG P P+ RP P GPP
Sbjct: 210 GQKGEMGPKGEPGIAGHRGPTGRPGKRGKQGQKGDSGVMGPPGKPGPSGQPGRPGPPGPP 269
Query: 307 PRCSVPGCPHPRRYACSRTGQALC--SLQCYRINLQMRLGGPEGPGSPLL 354
P + P R G+ LC ++ + + GP P P++
Sbjct: 270 PAGQLIMGPKGERGFPGPPGRCLCGPTMNVNNPSYGESVYGPSSPRVPVI 319
>gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 40.4 bits (93), Expect = 0.002
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 17/157 (10%)
Query: 171 INERLLTARQRALLQKARSQ--PSPMLPLPVAEGCPPPALTEEMLLKREERARKRRLQAA 228
I++ A + ALL+ RS+ P PL E P +E +REE+ R+RR + A
Sbjct: 471 ISDNTKAALKAALLKSLRSRLRDGPSAPLEAPEP-RKPVTAQERQREREEK-RRRRQERA 528
Query: 229 RRAEEHKNQTIERLTKTAATSGRGGRGGARGERRGGRAAAP------APMVRYCSGAQGS 282
+ E+ + + + G G GG + G + R A +
Sbjct: 529 KEREKRRQE------RERKERGAGASGGPSTDPLAGLVLSDNDRSLLERWTRMARPAAPA 582
Query: 283 TLSFPPGVPAPTAVSQRPSPSGPPP-RCSVPGCPHPR 318
S P PAPT P+ PPP + P P P+
Sbjct: 583 LTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQ 619
>gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 40.4 bits (93), Expect = 0.002
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 17/157 (10%)
Query: 171 INERLLTARQRALLQKARSQ--PSPMLPLPVAEGCPPPALTEEMLLKREERARKRRLQAA 228
I++ A + ALL+ RS+ P PL E P +E +REE+ R+RR + A
Sbjct: 471 ISDNTKAALKAALLKSLRSRLRDGPSAPLEAPEP-RKPVTAQERQREREEK-RRRRQERA 528
Query: 229 RRAEEHKNQTIERLTKTAATSGRGGRGGARGERRGGRAAAP------APMVRYCSGAQGS 282
+ E+ + + + G G GG + G + R A +
Sbjct: 529 KEREKRRQE------RERKERGAGASGGPSTDPLAGLVLSDNDRSLLERWTRMARPAAPA 582
Query: 283 TLSFPPGVPAPTAVSQRPSPSGPPP-RCSVPGCPHPR 318
S P PAPT P+ PPP + P P P+
Sbjct: 583 LTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQ 619
>gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 40.4 bits (93), Expect = 0.002
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 17/157 (10%)
Query: 171 INERLLTARQRALLQKARSQ--PSPMLPLPVAEGCPPPALTEEMLLKREERARKRRLQAA 228
I++ A + ALL+ RS+ P PL E P +E +REE+ R+RR + A
Sbjct: 471 ISDNTKAALKAALLKSLRSRLRDGPSAPLEAPEP-RKPVTAQERQREREEK-RRRRQERA 528
Query: 229 RRAEEHKNQTIERLTKTAATSGRGGRGGARGERRGGRAAAP------APMVRYCSGAQGS 282
+ E+ + + + G G GG + G + R A +
Sbjct: 529 KEREKRRQE------RERKERGAGASGGPSTDPLAGLVLSDNDRSLLERWTRMARPAAPA 582
Query: 283 TLSFPPGVPAPTAVSQRPSPSGPPP-RCSVPGCPHPR 318
S P PAPT P+ PPP + P P P+
Sbjct: 583 LTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQ 619
>gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo
sapiens]
Length = 677
Score = 40.4 bits (93), Expect = 0.002
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 17/157 (10%)
Query: 171 INERLLTARQRALLQKARSQ--PSPMLPLPVAEGCPPPALTEEMLLKREERARKRRLQAA 228
I++ A + ALL+ RS+ P PL E P +E +REE+ R+RR + A
Sbjct: 332 ISDNTKAALKAALLKSLRSRLRDGPSAPLEAPEP-RKPVTAQERQREREEK-RRRRQERA 389
Query: 229 RRAEEHKNQTIERLTKTAATSGRGGRGGARGERRGGRAAAP------APMVRYCSGAQGS 282
+ E+ + + + G G GG + G + R A +
Sbjct: 390 KEREKRRQE------RERKERGAGASGGPSTDPLAGLVLSDNDRSLLERWTRMARPAAPA 443
Query: 283 TLSFPPGVPAPTAVSQRPSPSGPPP-RCSVPGCPHPR 318
S P PAPT P+ PPP + P P P+
Sbjct: 444 LTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQ 480
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 40.0 bits (92), Expect = 0.003
Identities = 43/141 (30%), Positives = 51/141 (36%), Gaps = 23/141 (16%)
Query: 227 AARRAEEHKNQTIERLTKTAATSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSF 286
AA + RL+ AA R G +G GG A+P P GA
Sbjct: 54 AAHPPAPRERPAAARLSALAAAQPRRRSPGPQGGG-GGDIASPLPPALQPRGA------- 105
Query: 287 PPGVPAPTAVSQRPS-PSGPPPRCSVPGCPH-----PRRYACSR--------TGQALCSL 332
P VPA + P+ PS PPPR S+P PH P A R G
Sbjct: 106 -PAVPAAPSPGPLPARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARPLPQGSVTARE 164
Query: 333 QCYRINLQMRLGGPEGPGSPL 353
Q R + R G PE G L
Sbjct: 165 QEQRPRSRRRAGAPEALGPAL 185
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 39.7 bits (91), Expect = 0.004
Identities = 40/136 (29%), Positives = 54/136 (39%), Gaps = 20/136 (14%)
Query: 193 PMLPLPVAEG-CPPPALTEEMLLKREERARKRR------LQAARRAEEHKNQTIERLTKT 245
P LP A G C P + +EM R R+RR AA + QT E
Sbjct: 8 PFLPQRHAAGQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAAAAAVAGGEQQTPE---PE 64
Query: 246 AATSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSGP 305
+GR G G + + R +++P P+ QG PPG P P + + SG
Sbjct: 65 PGEAGRDGMGDSGRDSRSPDSSSPNPL------PQGVPPPSPPGPPLPPSTAPSLGGSGA 118
Query: 306 PPRCSVP----GCPHP 317
PP +P G P P
Sbjct: 119 PPPPPMPPPPLGSPFP 134
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 39.3 bits (90), Expect = 0.005
Identities = 42/138 (30%), Positives = 50/138 (36%), Gaps = 23/138 (16%)
Query: 227 AARRAEEHKNQTIERLTKTAATSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSF 286
AA + RL+ AA R G +G GG A+P P GA
Sbjct: 54 AAHPPAPRERPAAARLSALAAAQPRRRSPGPQGGG-GGDIASPLPPALQPRGA------- 105
Query: 287 PPGVPAPTAVSQRPS-PSGPPPRCSVPGCPH-----PRRYACSR--------TGQALCSL 332
P VPA + P+ PS PPPR S+P PH P A R G
Sbjct: 106 -PAVPAAPSPGPLPARPSSPPPRPSLPSGPHRPVLPPSALAAPRPPLARPLPQGSVTARE 164
Query: 333 QCYRINLQMRLGGPEGPG 350
Q R + R G PE G
Sbjct: 165 QEQRPRSRRRAGAPEALG 182
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 39.3 bits (90), Expect = 0.005
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Query: 185 QKARSQPSPMLPLPVAEGCPPPALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTK 244
Q + P+ + P PV PP ++ KRE + R++ + + + I +
Sbjct: 149 QGVQQFPTGVAPAPVLMNQPP-----QIAPKRERKTI--RIRDPNQGGKDITEEIMSGAR 201
Query: 245 TAATSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSG 304
TA+T GG + G A +VR +QG+ ++ PG+P P PS
Sbjct: 202 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDRSQGAIIADRPGLPGPEHSPSESQPSS 261
Query: 305 PPP 307
P P
Sbjct: 262 PSP 264
>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
isoform 2 [Homo sapiens]
Length = 1512
Score = 39.3 bits (90), Expect = 0.005
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Query: 185 QKARSQPSPMLPLPVAEGCPPPALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTK 244
Q + P+ + P PV PP ++ KRE + R++ + + + I +
Sbjct: 62 QGVQQFPTGVAPAPVLMNQPP-----QIAPKRERKTI--RIRDPNQGGKDITEEIMSGAR 114
Query: 245 TAATSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSG 304
TA+T GG + G A +VR +QG+ ++ PG+P P PS
Sbjct: 115 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDRSQGAIIADRPGLPGPEHSPSESQPSS 174
Query: 305 PPP 307
P P
Sbjct: 175 PSP 177
>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 39.3 bits (90), Expect = 0.005
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Query: 185 QKARSQPSPMLPLPVAEGCPPPALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTK 244
Q + P+ + P PV PP ++ KRE + R++ + + + I +
Sbjct: 149 QGVQQFPTGVAPAPVLMNQPP-----QIAPKRERKTI--RIRDPNQGGKDITEEIMSGAR 201
Query: 245 TAATSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSG 304
TA+T GG + G A +VR +QG+ ++ PG+P P PS
Sbjct: 202 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDRSQGAIIADRPGLPGPEHSPSESQPSS 261
Query: 305 PPP 307
P P
Sbjct: 262 PSP 264
>gi|4507347 TBP-associated factor 2 [Homo sapiens]
Length = 1199
Score = 39.3 bits (90), Expect = 0.005
Identities = 22/39 (56%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 31 HGHGVHKKKHKKHKKKHKKKH---HQEEDAGP-TQPSPA 65
H H HKKK KKHK KHK KH +E+D P T SPA
Sbjct: 1149 HHHHEHKKKKKKHKHKHKHKHKHDSKEKDKEPFTFSSPA 1187
>gi|167234429 zinc finger and BTB domain containing 17 [Homo
sapiens]
Length = 803
Score = 38.9 bits (89), Expect = 0.007
Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 39 KHKKHKKKHKKKHHQEEDAGPTQPSPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSP 98
K K +K + E AG + +P P LK + GGQ S T + PR P
Sbjct: 135 KRAKEEKVATSTLSRLEQAG--RSTPIGPSRDLKEERGGQAQSAASGAEQTEKADAPREP 192
Query: 99 SPLMVVDNEEEPMEGVPLEQYRAWLDEDS--NLSPSPLRDLSGGLGGQEEEEEQRW--LD 154
P V+ + +P G+ + A L E S + P R QEE+EE+ +
Sbjct: 193 PP---VELKPDPTSGMAAAEAEAALSESSEQEMEVEPARKGEEEQKEQEEQEEEGAGPAE 249
Query: 155 ALEKGELDDNGDLKKE 170
E+G +NG+ +E
Sbjct: 250 VKEEGSQLENGEAPEE 265
>gi|56549694 enabled homolog isoform a [Homo sapiens]
Length = 591
Score = 38.1 bits (87), Expect = 0.012
Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 14/193 (7%)
Query: 137 LSGGLGGQEEEEEQRWLDALEKGELDDNGDLKKEINERLLTARQRALLQKARSQ--PSPM 194
+ G +E E ++R L ++ + + L++E ER R+R ++ +
Sbjct: 131 VQNGPSQEELEIQRRQLQEQQRQKELERERLERERMERERLERERLERERLERERLEQEQ 190
Query: 195 LPLPVAEGCPPPALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTKTAATSGRGGR 254
L E L + L+R+ER ++ R E + + +ERL + R +
Sbjct: 191 LERERQERERQERLERQERLERQERLERQERLDRERQERQERERLERLERERQERERQEQ 250
Query: 255 GGARG-----ERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPS-------P 302
ERR AAAPA + + G + + PG+ A + ++ PS P
Sbjct: 251 LEREQLEWERERRISSAAAPASVETPLNSVLGDSSASEPGLQAASQPAETPSQQGIVLGP 310
Query: 303 SGPPPRCSVPGCP 315
PPP +P P
Sbjct: 311 LAPPPPPPLPPGP 323
Score = 33.1 bits (74), Expect = 0.39
Identities = 46/181 (25%), Positives = 66/181 (36%), Gaps = 14/181 (7%)
Query: 147 EEEQRWLDALEKGELDDNGDLKKEINERLLTARQRALLQKARSQPSPMLPLPVAEGCPPP 206
E E+ + LE+ L+ L++E ER RQ L ++ R + L
Sbjct: 172 ERERLERERLERERLEQE-QLERERQER---ERQERLERQERLERQERLERQERLDRERQ 227
Query: 207 ALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTKTAA------TSGRGGRGGARGE 260
E L+R ER R+ R + + E ER +AA T G +
Sbjct: 228 ERQERERLERLERERQERERQEQLEREQLEWERERRISSAAAPASVETPLNSVLGDSSAS 287
Query: 261 RRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQR----PSPSGPPPRCSVPGCPH 316
G +AA+ G L+ PP P P +Q P P GPPP +P
Sbjct: 288 EPGLQAASQPAETPSQQGIVLGPLAPPPPPPLPPGPAQASVALPPPPGPPPPPPLPSTGP 347
Query: 317 P 317
P
Sbjct: 348 P 348
>gi|39930375 enabled homolog isoform b [Homo sapiens]
Length = 570
Score = 38.1 bits (87), Expect = 0.012
Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 14/193 (7%)
Query: 137 LSGGLGGQEEEEEQRWLDALEKGELDDNGDLKKEINERLLTARQRALLQKARSQ--PSPM 194
+ G +E E ++R L ++ + + L++E ER R+R ++ +
Sbjct: 131 VQNGPSQEELEIQRRQLQEQQRQKELERERLERERMERERLERERLERERLERERLEQEQ 190
Query: 195 LPLPVAEGCPPPALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTKTAATSGRGGR 254
L E L + L+R+ER ++ R E + + +ERL + R +
Sbjct: 191 LERERQERERQERLERQERLERQERLERQERLDRERQERQERERLERLERERQERERQEQ 250
Query: 255 GGARG-----ERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPS-------P 302
ERR AAAPA + + G + + PG+ A + ++ PS P
Sbjct: 251 LEREQLEWERERRISSAAAPASVETPLNSVLGDSSASEPGLQAASQPAETPSQQGIVLGP 310
Query: 303 SGPPPRCSVPGCP 315
PPP +P P
Sbjct: 311 LAPPPPPPLPPGP 323
Score = 33.1 bits (74), Expect = 0.39
Identities = 46/181 (25%), Positives = 66/181 (36%), Gaps = 14/181 (7%)
Query: 147 EEEQRWLDALEKGELDDNGDLKKEINERLLTARQRALLQKARSQPSPMLPLPVAEGCPPP 206
E E+ + LE+ L+ L++E ER RQ L ++ R + L
Sbjct: 172 ERERLERERLERERLEQE-QLERERQER---ERQERLERQERLERQERLERQERLDRERQ 227
Query: 207 ALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTKTAA------TSGRGGRGGARGE 260
E L+R ER R+ R + + E ER +AA T G +
Sbjct: 228 ERQERERLERLERERQERERQEQLEREQLEWERERRISSAAAPASVETPLNSVLGDSSAS 287
Query: 261 RRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQR----PSPSGPPPRCSVPGCPH 316
G +AA+ G L+ PP P P +Q P P GPPP +P
Sbjct: 288 EPGLQAASQPAETPSQQGIVLGPLAPPPPPPLPPGPAQASVALPPPPGPPPPPPLPSTGP 347
Query: 317 P 317
P
Sbjct: 348 P 348
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 37.7 bits (86), Expect = 0.016
Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 249 SGRGGRGGARGERR--GGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSGPP 306
+G G G +GER GG AA P R G GS + PG P P+ + P GP
Sbjct: 851 AGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGN--PGPPGPSGSPGKDGPPGPA 908
Query: 307 PRCSVPGCP 315
PG P
Sbjct: 909 GNTGAPGSP 917
Score = 31.6 bits (70), Expect = 1.1
Identities = 34/108 (31%), Positives = 41/108 (37%), Gaps = 24/108 (22%)
Query: 250 GRGGRGGARGERRGGRAAAPA-PMVRYCSGAQGSTLSF----PPGVPAPTAVSQRPSPSG 304
G G GA GE GR P P +R G+ G S PPG + P PSG
Sbjct: 513 GPAGPRGAAGEP--GRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSG 570
Query: 305 PPPRCSVPGCPHPRRY--ACSRTGQALCSLQCYRINLQMRLGGPEGPG 350
P + V G P P+ A + G+ GGP GPG
Sbjct: 571 PRGQPGVMGFPGPKGNDGAPGKNGER---------------GGPGGPG 603
Score = 31.2 bits (69), Expect = 1.5
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 9/86 (10%)
Query: 237 QTIERLTKTAATSGRGGRGGARGERR--------GGRAAAPAPMVRYCSGAQGST-LSFP 287
Q ++ L T G G+ G G + GG+ A AP R G G+ L
Sbjct: 638 QGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGG 697
Query: 288 PGVPAPTAVSQRPSPSGPPPRCSVPG 313
G P P P GPP PG
Sbjct: 698 AGPPGPEGGKGAAGPPGPPGAAGTPG 723
Score = 30.4 bits (67), Expect = 2.5
Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 250 GRGGRGGARGERRGGRAAAPA--PMVRYCSGAQGSTLSFPPG-------VPAPTAVSQRP 300
G G G GER G P P +G QG PG P P + P
Sbjct: 585 GNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLP 644
Query: 301 SPSGPPPRCSVPGCPHPR 318
GPP PG P P+
Sbjct: 645 GTGGPPGENGKPGEPGPK 662
Score = 30.0 bits (66), Expect = 3.3
Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 250 GRGGRGGARGERRGGRAAAPAPMVRYCSGAQGS-----TLSFPP--GVPAPTAVSQRPSP 302
G GG G G G A P P + G +GS FP G+P P + P P
Sbjct: 834 GEGGPPGVAGPPGGSGPAGP-PGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGP 892
Query: 303 SGPPPRCSVPGCPHP 317
GP G P P
Sbjct: 893 PGPSGSPGKDGPPGP 907
Score = 30.0 bits (66), Expect = 3.3
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 14/73 (19%)
Query: 249 SGRGGRGGARGER----RGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSG 304
+G G G +G R G +P P +G QG+ G P P PSG
Sbjct: 1097 TGERGAAGIKGHRGFPGNPGAPGSPGP-----AGQQGAI-----GSPGPAGPRGPVGPSG 1146
Query: 305 PPPRCSVPGCPHP 317
PP + G P P
Sbjct: 1147 PPGKDGTSGHPGP 1159
Score = 29.6 bits (65), Expect = 4.3
Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 16/77 (20%)
Query: 250 GRGGRGGARGERR-GGRAAAPAPM-VRYCSGAQGSTLSFPPGVPAPTAV---------SQ 298
G G G +GE G AP PM R G +G PG+P
Sbjct: 276 GETGAPGLKGENGLPGENGAPGPMGPRGAPGERGR-----PGLPGAAGARGNDGARGSDG 330
Query: 299 RPSPSGPPPRCSVPGCP 315
+P P GPP PG P
Sbjct: 331 QPGPPGPPGTAGFPGSP 347
Score = 29.3 bits (64), Expect = 5.6
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 248 TSGRGGRGGARGERRGGRAAAP----APMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPS 303
T+G G GA+GE G A +P AP R G QG + G P P ++ P
Sbjct: 340 TAGFPGSPGAKGEV--GPAGSPGSNGAPGQRGEPGPQGHAGA--QGPPGPPGINGSPGGK 395
Query: 304 GPPPRCSVPGCP 315
G +PG P
Sbjct: 396 GEMGPAGIPGAP 407
Score = 28.9 bits (63), Expect = 7.4
Identities = 26/75 (34%), Positives = 28/75 (37%), Gaps = 18/75 (24%)
Query: 250 GRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSGP---- 305
G G GA GER AP R +G G PG P P P+GP
Sbjct: 474 GANGLPGAAGERG-------APGFRGPAGPNGI-----PGEKGPAGERGAPGPAGPRGAA 521
Query: 306 --PPRCSVPGCPHPR 318
P R VPG P R
Sbjct: 522 GEPGRDGVPGGPGMR 536
Score = 28.9 bits (63), Expect = 7.4
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 248 TSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSGPPP 307
++G G G G G+ P P +GA GS PGV P + +P G P
Sbjct: 886 SNGNPGPPGPSGSP--GKDGPPGPAGN--TGAPGS-----PGVSGPKGDAGQPGEKGSPG 936
Query: 308 RCSVPGCPHP 317
PG P P
Sbjct: 937 AQGPPGAPGP 946
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 37.7 bits (86), Expect = 0.016
Identities = 45/167 (26%), Positives = 65/167 (38%), Gaps = 16/167 (9%)
Query: 160 ELDDNGDLKKEINERLLTARQRALLQKARSQPSPMLPLPVAEGCPPPALTEEMLLKREER 219
E DD+ + L AR+ L ++ + P LP P PP A R E
Sbjct: 655 EGDDSDGASGDSGSGLGDARE-LLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEE 713
Query: 220 ARKRRLQAARRAEEHK-NQTIERLTKTAAT-SGRGGRGGARGERRGGRAAAPAPMVRYCS 277
++ A+ A+ + ++ + T GR GG +G++ G P P R +
Sbjct: 714 VEEQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQK--GEPGVPGPPGR--A 769
Query: 278 GAQGST-LSFPPGVPAPT--------AVSQRPSPSGPPPRCSVPGCP 315
G GS L PPG+P P A+ P P GPP G P
Sbjct: 770 GPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTP 816
Score = 35.0 bits (79), Expect = 0.10
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 14/69 (20%)
Query: 250 GRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSGPPPRC 309
G G+ G RGE GG G GS+L PPG P P P P G R
Sbjct: 1331 GDAGQKGERGEPGGG-------------GFFGSSLPGPPGPPGPRGYPGIPGPKGESIR- 1376
Query: 310 SVPGCPHPR 318
PG P P+
Sbjct: 1377 GQPGPPGPQ 1385
Score = 34.3 bits (77), Expect = 0.18
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 250 GRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSGPPPRC 309
GR G G G++ G A AP + GA G P G + ++ P P+GPP
Sbjct: 959 GREGPPGRTGQK-GSLGEAGAPGHKGSKGAPG-----PAGARGESGLAGAPGPAGPPGPP 1012
Query: 310 SVPGCPHP 317
PG P P
Sbjct: 1013 GPPGPPGP 1020
Score = 33.1 bits (74), Expect = 0.39
Identities = 30/109 (27%), Positives = 33/109 (30%), Gaps = 22/109 (20%)
Query: 250 GRGGRGGARGERRGGRAAAPAPM-VRYCSGAQGSTLSFPPGVPAPTA-----VSQRPSPS 303
G G GG G G P P G +G ++ PG P P R P
Sbjct: 1340 GEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPP 1399
Query: 304 GPPPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQMRLGGPEGPGSP 352
GPP P P P R S G GP GP P
Sbjct: 1400 GPPGPPGPPSFPGPHRQTISVPGPP----------------GPPGPPGP 1432
Score = 28.9 bits (63), Expect = 7.4
Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 249 SGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSGPPPR 308
SG GG A RG P V G G VP P + P GPP
Sbjct: 889 SGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGF 948
Query: 309 CSVPGCPHP--RRYACSRTGQ 327
+PG P P R RTGQ
Sbjct: 949 PGLPGPPGPPGREGPPGRTGQ 969
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 37.7 bits (86), Expect = 0.016
Identities = 45/167 (26%), Positives = 65/167 (38%), Gaps = 16/167 (9%)
Query: 160 ELDDNGDLKKEINERLLTARQRALLQKARSQPSPMLPLPVAEGCPPPALTEEMLLKREER 219
E DD+ + L AR+ L ++ + P LP P PP A R E
Sbjct: 240 EGDDSDGASGDSGSGLGDARE-LLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEE 298
Query: 220 ARKRRLQAARRAEEHK-NQTIERLTKTAAT-SGRGGRGGARGERRGGRAAAPAPMVRYCS 277
++ A+ A+ + ++ + T GR GG +G++ G P P R +
Sbjct: 299 VEEQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQK--GEPGVPGPPGR--A 354
Query: 278 GAQGST-LSFPPGVPAPT--------AVSQRPSPSGPPPRCSVPGCP 315
G GS L PPG+P P A+ P P GPP G P
Sbjct: 355 GPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTP 401
Score = 35.0 bits (79), Expect = 0.10
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 14/69 (20%)
Query: 250 GRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSGPPPRC 309
G G+ G RGE GG G GS+L PPG P P P P G R
Sbjct: 916 GDAGQKGERGEPGGG-------------GFFGSSLPGPPGPPGPRGYPGIPGPKGESIR- 961
Query: 310 SVPGCPHPR 318
PG P P+
Sbjct: 962 GQPGPPGPQ 970
Score = 34.3 bits (77), Expect = 0.18
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 250 GRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSGPPPRC 309
GR G G G++ G A AP + GA G P G + ++ P P+GPP
Sbjct: 544 GREGPPGRTGQK-GSLGEAGAPGHKGSKGAPG-----PAGARGESGLAGAPGPAGPPGPP 597
Query: 310 SVPGCPHP 317
PG P P
Sbjct: 598 GPPGPPGP 605
Score = 33.1 bits (74), Expect = 0.39
Identities = 30/109 (27%), Positives = 33/109 (30%), Gaps = 22/109 (20%)
Query: 250 GRGGRGGARGERRGGRAAAPAPM-VRYCSGAQGSTLSFPPGVPAPTA-----VSQRPSPS 303
G G GG G G P P G +G ++ PG P P R P
Sbjct: 925 GEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPP 984
Query: 304 GPPPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQMRLGGPEGPGSP 352
GPP P P P R S G GP GP P
Sbjct: 985 GPPGPPGPPSFPGPHRQTISVPGPP----------------GPPGPPGP 1017
Score = 28.9 bits (63), Expect = 7.4
Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 249 SGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSGPPPR 308
SG GG A RG P V G G VP P + P GPP
Sbjct: 474 SGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGF 533
Query: 309 CSVPGCPHP--RRYACSRTGQ 327
+PG P P R RTGQ
Sbjct: 534 PGLPGPPGPPGREGPPGRTGQ 554
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 37.7 bits (86), Expect = 0.016
Identities = 45/167 (26%), Positives = 65/167 (38%), Gaps = 16/167 (9%)
Query: 160 ELDDNGDLKKEINERLLTARQRALLQKARSQPSPMLPLPVAEGCPPPALTEEMLLKREER 219
E DD+ + L AR+ L ++ + P LP P PP A R E
Sbjct: 420 EGDDSDGASGDSGSGLGDARE-LLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEE 478
Query: 220 ARKRRLQAARRAEEHK-NQTIERLTKTAAT-SGRGGRGGARGERRGGRAAAPAPMVRYCS 277
++ A+ A+ + ++ + T GR GG +G++ G P P R +
Sbjct: 479 VEEQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQK--GEPGVPGPPGR--A 534
Query: 278 GAQGST-LSFPPGVPAPT--------AVSQRPSPSGPPPRCSVPGCP 315
G GS L PPG+P P A+ P P GPP G P
Sbjct: 535 GPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTP 581
Score = 35.0 bits (79), Expect = 0.10
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 14/69 (20%)
Query: 250 GRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSGPPPRC 309
G G+ G RGE GG G GS+L PPG P P P P G R
Sbjct: 1096 GDAGQKGERGEPGGG-------------GFFGSSLPGPPGPPGPRGYPGIPGPKGESIR- 1141
Query: 310 SVPGCPHPR 318
PG P P+
Sbjct: 1142 GQPGPPGPQ 1150
Score = 34.3 bits (77), Expect = 0.18
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 250 GRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSGPPPRC 309
GR G G G++ G A AP + GA G P G + ++ P P+GPP
Sbjct: 724 GREGPPGRTGQK-GSLGEAGAPGHKGSKGAPG-----PAGARGESGLAGAPGPAGPPGPP 777
Query: 310 SVPGCPHP 317
PG P P
Sbjct: 778 GPPGPPGP 785
Score = 33.1 bits (74), Expect = 0.39
Identities = 30/109 (27%), Positives = 33/109 (30%), Gaps = 22/109 (20%)
Query: 250 GRGGRGGARGERRGGRAAAPAPM-VRYCSGAQGSTLSFPPGVPAPTA-----VSQRPSPS 303
G G GG G G P P G +G ++ PG P P R P
Sbjct: 1105 GEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPP 1164
Query: 304 GPPPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQMRLGGPEGPGSP 352
GPP P P P R S G GP GP P
Sbjct: 1165 GPPGPPGPPSFPGPHRQTISVPGPP----------------GPPGPPGP 1197
Score = 28.9 bits (63), Expect = 7.4
Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 249 SGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSGPPPR 308
SG GG A RG P V G G VP P + P GPP
Sbjct: 654 SGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGF 713
Query: 309 CSVPGCPHP--RRYACSRTGQ 327
+PG P P R RTGQ
Sbjct: 714 PGLPGPPGPPGREGPPGRTGQ 734
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 37.7 bits (86), Expect = 0.016
Identities = 44/154 (28%), Positives = 59/154 (38%), Gaps = 13/154 (8%)
Query: 170 EINERLLTARQRALLQKARSQPSPMLPL----PVAEGCPPPALTEE--MLLKREERARKR 223
E+ ++L AR+ + R S + P E PP A T + LK EE K
Sbjct: 428 ELEKQLSQARKELETLRERFSESTAMGASRRPPEPEKAPPAAPTRPSALELKVEELEEKG 487
Query: 224 RLQAARRAEEHKNQTIERLTKTAATSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGST 283
++ R + + IE L AT GG G G + AP GA
Sbjct: 488 LIRILRGPGDAVS--IEILPVAVATPS-GGDAPTPGVPTGSPSPDLAPAAEPAPGAAPPP 544
Query: 284 LSFPPGVPAPTAVSQRPSPSGPPPRCSVPGCPHP 317
PG+P+P Q PS PP +PG P P
Sbjct: 545 PPPLPGLPSP----QEAPPSAPPQAPPLPGSPEP 574
Score = 32.7 bits (73), Expect = 0.51
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 277 SGAQGSTLSFPPGVPAPT-AVSQRPSP-SGPPPRCSVPGCPHPRRYACSRTGQA 328
SG T P G P+P A + P+P + PPP +PG P P+ S QA
Sbjct: 512 SGGDAPTPGVPTGSPSPDLAPAAEPAPGAAPPPPPPLPGLPSPQEAPPSAPPQA 565
>gi|239754797 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 37.4 bits (85), Expect = 0.021
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 225 LQAARRAEEHKNQTIERLTKTAATSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTL 284
+Q+ R+ K + +E A RGG + E R G AAAP G +G
Sbjct: 78 VQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAAAPGGRAGLYGGPRGPHH 137
Query: 285 SFPPGVPAPTAVSQRPS--PSGPPPR 308
PG+ PTA + RP P PPR
Sbjct: 138 VSLPGL--PTARAHRPGAWPELAPPR 161
>gi|239743415 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 37.4 bits (85), Expect = 0.021
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 225 LQAARRAEEHKNQTIERLTKTAATSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTL 284
+Q+ R+ K + +E A RGG + E R G AAAP G +G
Sbjct: 78 VQSGHRSHASKRRFLEEGEAPARRLSERRRGGGKEESRPGTAAAPGGRAGLYGGPRGPHH 137
Query: 285 SFPPGVPAPTAVSQRPS--PSGPPPR 308
PG+ PTA + RP P PPR
Sbjct: 138 VSLPGL--PTARAHRPGAWPELAPPR 161
>gi|4504713 insulinoma-associated 1 [Homo sapiens]
Length = 510
Score = 37.4 bits (85), Expect = 0.021
Identities = 41/146 (28%), Positives = 52/146 (35%), Gaps = 12/146 (8%)
Query: 173 ERLLTARQRALLQKARSQPSPMLPLPVAEGCPPPALTEEML--LKREERARKRRLQAARR 230
ER A AL QP P P G P A + + R ++ R
Sbjct: 60 ERAHAALAAALACAPGPQPPPQGPRAAHFGNPEAAHPAPLYSPTRPVSREHEKHKYFERS 119
Query: 231 AEEHKNQTIERLTKTAATSGRGGRGGARGERRGGRAA------APAPM---VRYCSGAQG 281
+ E AA G GG GGA G GG APA + + +GA+
Sbjct: 120 FNLGSPVSAESFPTPAALLGGGGGGGASGAGGGGTCGGDPLLFAPAELKMGTAFSAGAEA 179
Query: 282 STLSFPPGVPAPTAVSQRPSPSGPPP 307
+ PG P P A + RP PPP
Sbjct: 180 AR-GPGPGPPLPPAAALRPPGKRPPP 204
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 37.0 bits (84), Expect = 0.027
Identities = 68/312 (21%), Positives = 118/312 (37%), Gaps = 60/312 (19%)
Query: 35 VHKKKHKKHKKKHKKKHHQEEDAGPTQPSPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEG 94
V KK K+ K K KKK Q + + K + K K+K + T G
Sbjct: 521 VKKKLKKELKTKMKKKEKQRDREREKDKNKDKSKEKDKVKEKEKDKET-----------G 569
Query: 95 PRSPSPLMVVDNEEEPMEGVPLEQYRAWLDEDSNLSPSPLRDLSGGLGGQEEEEEQRWLD 154
+ P EEE + Y+ + E ++ P L GL +E+E+ +
Sbjct: 570 RETKYPWKEFLKEEE------ADPYKFKIKEFEDVDPKV--KLKDGLVRKEKEKHKDKKK 621
Query: 155 ALEKGELDDNGDLKKEINERLLTARQRALLQKARSQPSPMLPLPVAEGCPP--------- 205
EKG+ D + K+++ ++ + +A P+P L LP E P
Sbjct: 622 DREKGKKDKDKREKEKVKDKGREDKMKA--------PAPPLVLPPKELALPLFSPATASR 673
Query: 206 ---------PALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTKTAATSGRGGRGG 256
P L E++ ++E+ K + + + ++ K + E+ K R
Sbjct: 674 VPAMLPSLLPVLPEKLFEEKEKVKEKEKKKDKKEKKKKKEKEKEKKEKEREKEKREREKR 733
Query: 257 ARGERRGGR--------AAAPAPMVRYCS---GAQGSTLSFPPGVPAPTAVSQRPSPSGP 305
+ + + A AP+P++ + GA + VPAP A +P+PS
Sbjct: 734 EKEKEKHKHEKIKVEPVALAPSPVIPRLTLRVGAGQDKIVISKVVPAPEA---KPAPSQN 790
Query: 306 PPRCSVPGCPHP 317
P+ + P P P
Sbjct: 791 RPK-TPPPAPAP 801
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 36.6 bits (83), Expect = 0.035
Identities = 43/154 (27%), Positives = 55/154 (35%), Gaps = 14/154 (9%)
Query: 178 ARQRALLQKARSQPSPMLPLPVAEGCPPPALTEEMLLKREERARKRRLQ---AARRAEEH 234
+R LQ+ + L L E PPP + AR + R AEE
Sbjct: 2 SRGAGALQRRTTTYLISLTLVKLESVPPPPPSPSAAAAGAAGARGSETGDPGSPRGAEEP 61
Query: 235 KNQTIERLTKTA----ATSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGV 290
+ ERL ++ G GGA A+PA V G + S + PPG
Sbjct: 62 GKKRHERLFHRQDALWISTSSAGTGGAEPPALSPAPASPARPVSPAPGRRLSLWAVPPGP 121
Query: 291 PAPTAVSQRPSPSGPP-----PRCSVP--GCPHP 317
P +S P P G P P S P G P P
Sbjct: 122 PLSGGLSPDPKPGGAPTSSRRPLLSSPSWGGPEP 155
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 36.6 bits (83), Expect = 0.035
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 246 AATSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSGP 305
AA+ G GG GG G G P+P+ + + + P G P P Q+P P
Sbjct: 91 AASPGSGGGGGGLGP--GAHGYGPSPIDLWLDAPRSCRMEPPDGPPPPP--QQQPPPPPQ 146
Query: 306 PPRCSVPGCPHPRRYACS 323
PP+ P P+ +CS
Sbjct: 147 PPQ------PAPQATSCS 158
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,294,474
Number of Sequences: 37866
Number of extensions: 1271048
Number of successful extensions: 11985
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 641
Number of HSP's that attempted gapping in prelim test: 9197
Number of HSP's gapped (non-prelim): 3138
length of query: 356
length of database: 18,247,518
effective HSP length: 103
effective length of query: 253
effective length of database: 14,347,320
effective search space: 3629871960
effective search space used: 3629871960
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.