Guide to the Human Genome
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Name: SLC6A5 Sequence: fasta or formatted (797aa) NCBI GI: 92859670
Description:

solute carrier family 6 (neurotransmitter transporter, glycine), member 5

Referenced in:

GABA and Glycine
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         73           4
 C cysteine            2.9         23           2
 D aspartate           2.9         23           1
 E glutamate           3.9         31           2
 F phenylalanine       6.3         50           2
 G glycine             7.7         61           3
 H histidine           0.9          7           1
 I isoleucine          7.2         57           2
 K lysine              4.0         32           1
 L leucine             9.3         74           3
 M methionine          2.9         23           2
 N asparagine          3.6         29           2
 P proline             7.0         56           4
 Q glutamine           3.3         26           1
 R arginine            3.0         24           1
 S serine              7.0         56           2
 T threonine           5.9         47           1
 V valine              7.0         56           2
 W tryptophan          2.5         20           1
 Y tyrosine            3.6         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 6 (neurotransmitter transporte... 
SLC6A14               0.384   solute carrier family 6 (amino acid transporter), mem...
SLC6A9                0.379   solute carrier family 6 member 9 isoform 3 
SLC6A9                0.378   solute carrier family 6 member 9 isoform 2 
SLC6A9                0.377   solute carrier family 6 member 9 isoform 1 
SLC6A7                0.366   solute carrier family 6, member 7 
SLC6A1                0.332   solute carrier family 6 (neurotransmitter transport...
SLC6A13               0.312   solute carrier family 6 (neurotransmitter transporte...
SLC6A12               0.311   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.311   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.311   solute carrier family 6 (neurotransmitter transport...
SLC6A2                0.309   solute carrier family 6 member 2 
SLC6A6                0.309   solute carrier family 6 (neurotransmitter transport...
SLC6A6                0.309   solute carrier family 6 (neurotransmitter transporte...
SLC6A3                0.307   solute carrier family 6 (neurotransmitter transporter...
SLC6A11               0.306   solute carrier family 6 (neurotransmitter transporter...
SLC6A8                0.304   solute carrier family 6 member 8 isoform 1 
SLC6A4                0.296   solute carrier family 6 member 4 
SLC6A8                0.293   solute carrier family 6 member 8 isoform 2 
SLC6A8                0.243   solute carrier family 6 member 8 isoform 3 
SLC6A19               0.234   solute carrier family 6, member 19 
SLC6A18               0.227   solute carrier family 6, member 18 
SLC6A20               0.211   solute carrier family 6, member 20 isoform 1 
SLC6A17               0.179   solute carrier family 6, member 17 
SLC6A20               0.172   solute carrier family 6, member 20 isoform 2 
SLC6A15               0.154   solute carrier family 6, member 15 isoform 1 
SLC6A16               0.126   solute carrier family 6, member 16 
SLC6A15               0.109   solute carrier family 6, member 15 isoform 3 
SLC6A15               0.089   solute carrier family 6, member 15 isoform 2 
SLC6A6                0.088   solute carrier family 6 (neurotransmitter transport...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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