Guide to the Human Genome
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Name: SLC6A20 Sequence: fasta or formatted (555aa) NCBI GI: 12408638
Description:

solute carrier family 6, member 20 isoform 2

Referenced in:

Kidney
Solute Carrier Families

Other entries for this name:
alt prot [592aa] solute carrier family 6, member 20 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         48           2
 C cysteine            2.3         13           1
 D aspartate           2.5         14           1
 E glutamate           4.1         23           2
 F phenylalanine       5.8         32           2
 G glycine             7.0         39           3
 H histidine           0.7          4           1
 I isoleucine          6.3         35           2
 K lysine              3.6         20           2
 L leucine            12.8         71           3
 M methionine          2.9         16           1
 N asparagine          4.3         24           2
 P proline             3.6         20           1
 Q glutamine           3.4         19           1
 R arginine            2.3         13           2
 S serine              8.6         48           2
 T threonine           5.0         28           1
 V valine              7.4         41           3
 W tryptophan          2.9         16           1
 Y tyrosine            5.6         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 6, member 20 isoform 2 
SLC6A20               0.984   solute carrier family 6, member 20 isoform 1 
SLC6A18               0.463   solute carrier family 6, member 18 
SLC6A19               0.458   solute carrier family 6, member 19 
SLC6A15               0.412   solute carrier family 6, member 15 isoform 1 
SLC6A17               0.387   solute carrier family 6, member 17 
SLC6A15               0.348   solute carrier family 6, member 15 isoform 3 
SLC6A16               0.273   solute carrier family 6, member 16 
SLC6A8                0.264   solute carrier family 6 member 8 isoform 1 
SLC6A4                0.258   solute carrier family 6 member 4 
SLC6A1                0.258   solute carrier family 6 (neurotransmitter transport...
SLC6A9                0.253   solute carrier family 6 member 9 isoform 3 
SLC6A9                0.253   solute carrier family 6 member 9 isoform 2 
SLC6A9                0.253   solute carrier family 6 member 9 isoform 1 
SLC6A5                0.253   solute carrier family 6 (neurotransmitter transporte...
SLC6A8                0.245   solute carrier family 6 member 8 isoform 2 
SLC6A12               0.245   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.245   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.245   solute carrier family 6 (neurotransmitter transport...
SLC6A11               0.242   solute carrier family 6 (neurotransmitter transporter...
SLC6A2                0.239   solute carrier family 6 member 2 
SLC6A6                0.237   solute carrier family 6 (neurotransmitter transport...
SLC6A6                0.237   solute carrier family 6 (neurotransmitter transporte...
SLC6A7                0.234   solute carrier family 6, member 7 
SLC6A13               0.233   solute carrier family 6 (neurotransmitter transporte...
SLC6A14               0.227   solute carrier family 6 (amino acid transporter), mem...
SLC6A15               0.203   solute carrier family 6, member 15 isoform 2 
SLC6A3                0.193   solute carrier family 6 (neurotransmitter transporter...
SLC6A8                0.188   solute carrier family 6 member 8 isoform 3 
SLC6A6                0.105   solute carrier family 6 (neurotransmitter transport...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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