Guide to the Human Genome
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Name: MARCH1 Sequence: fasta or formatted (272aa) NCBI GI: 8923613
Description:

membrane-associated RING-CH protein I

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         11           1
 C cysteine            6.2         17           2
 D aspartate           3.7         10           1
 E glutamate           4.8         13           2
 F phenylalanine       4.0         11           1
 G glycine             4.0         11           2
 H histidine           1.8          5           1
 I isoleucine          5.1         14           1
 K lysine              7.0         19           2
 L leucine             8.1         22           1
 M methionine          2.2          6           1
 N asparagine          4.4         12           1
 P proline             4.8         13           2
 Q glutamine           4.4         12           1
 R arginine            4.8         13           2
 S serine              8.1         22           2
 T threonine           7.7         21           2
 V valine              9.6         26           3
 W tryptophan          2.6          7           1
 Y tyrosine            2.6          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   membrane-associated RING-CH protein I 
MARCH8                0.603   cellular modulator of immune recognition isoform 7 [...
MARCH8                0.603   cellular modulator of immune recognition isoform 6 [...
MARCH8                0.603   cellular modulator of immune recognition isoform 8 [...
MARCH2                0.110   membrane-associated ring finger (C3HC4) 2 isoform 1 ...
MARCH2                0.110   membrane-associated ring finger (C3HC4) 2 isoform 1 ...
MARCH3                0.108   membrane-associated ring finger (C3HC4) 3 
MARCH6                0.095   membrane-associated ring finger (C3HC4) 6 
MARCH11               0.091   membrane-associated ring finger (C3HC4) 11 
MARCH2                0.091   membrane-associated ring finger (C3HC4) 2 isoform 2 ...
MARCH4                0.088   membrane-associated ring finger (C3HC4) 4 
MARCH9                0.082   membrane-associated RING-CH protein IX 
MARCH10               0.064   ring finger protein 190 
MARCH10               0.064   ring finger protein 190 
MARCH7                0.053   axotrophin 
MARCH5                0.035   membrane-associated ring finger (C3HC4) 5 
RNF145                0.022   ring finger protein 145 
RNF139                0.018   ring finger protein 139 
ZNRF4                 0.016   zinc and ring finger 4 
TTLL13                0.013   tubulin tyrosine ligase-like family, member 13 [Homo...
RNF160                0.011   zinc finger protein 294 
LOC729815             0.009   PREDICTED: hypothetical protein 
RNFT2                 0.007   transmembrane protein 118 isoform 1 
RNF213                0.007   ring finger protein 213 
C12orf64              0.007   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.007   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.007   PREDICTED: hypothetical protein LOC283310 
RNF165                0.007   ring finger protein 165 
MLL2                  0.005   myeloid/lymphoid or mixed-lineage leukemia 2 
TACC2                 0.005   transforming, acidic coiled-coil containing protein...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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