Guide to the Human Genome
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Name: MARCH5 Sequence: fasta or formatted (278aa) NCBI GI: 8923415
Description:

membrane-associated ring finger (C3HC4) 5

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         26           3
 C cysteine            3.6         10           1
 D aspartate           4.3         12           2
 E glutamate           4.0         11           2
 F phenylalanine       3.6         10           1
 G glycine             6.1         17           2
 H histidine           1.4          4           1
 I isoleucine          6.8         19           1
 K lysine              4.7         13           1
 L leucine             9.7         27           2
 M methionine          2.9          8           1
 N asparagine          2.9          8           1
 P proline             5.8         16           1
 Q glutamine           5.4         15           3
 R arginine            6.5         18           1
 S serine              4.0         11           2
 T threonine           4.3         12           1
 V valine              9.0         25           2
 W tryptophan          2.5          7           1
 Y tyrosine            3.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   membrane-associated ring finger (C3HC4) 5 
MARCH11               0.042   membrane-associated ring finger (C3HC4) 11 
MARCH8                0.037   cellular modulator of immune recognition isoform 7 [...
MARCH8                0.037   cellular modulator of immune recognition isoform 6 [...
MARCH8                0.037   cellular modulator of immune recognition isoform 8 [...
MARCH1                0.035   membrane-associated RING-CH protein I 
MARCH9                0.035   membrane-associated RING-CH protein IX 
MARCH4                0.033   membrane-associated ring finger (C3HC4) 4 
MARCH7                0.027   axotrophin 
MARCH10               0.018   ring finger protein 190 
MARCH10               0.018   ring finger protein 190 
MARCH6                0.018   membrane-associated ring finger (C3HC4) 6 
MARCH2                0.015   membrane-associated ring finger (C3HC4) 2 isoform 2 ...
MARCH2                0.015   membrane-associated ring finger (C3HC4) 2 isoform 1 ...
MARCH2                0.015   membrane-associated ring finger (C3HC4) 2 isoform 1 ...
MARCH3                0.013   membrane-associated ring finger (C3HC4) 3 
NUP210                0.013   nucleoporin 210 
NFXL1                 0.009   nuclear transcription factor, X-box binding-like 1 [...
TMC7                  0.005   transmembrane channel-like 7 isoform b 
TMC7                  0.005   transmembrane channel-like 7 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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