Guide to the Human Genome
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Name: TTLL13 Sequence: fasta or formatted (459aa) NCBI GI: 75677580
Description:

tubulin tyrosine ligase-like family, member 13

Referenced in:

Tubulins and Microtubules

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         23           2
 C cysteine            4.8         22           1
 D aspartate           5.7         26           1
 E glutamate           7.4         34           2
 F phenylalanine       3.3         15           1
 G glycine             5.0         23           2
 H histidine           2.2         10           1
 I isoleucine          5.7         26           3
 K lysine              7.2         33           2
 L leucine             8.7         40           2
 M methionine          3.1         14           1
 N asparagine          5.0         23           2
 P proline             4.8         22           1
 Q glutamine           3.1         14           2
 R arginine            8.3         38           3
 S serine              5.4         25           2
 T threonine           5.2         24           2
 V valine              4.8         22           1
 W tryptophan          1.3          6           1
 Y tyrosine            4.1         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tubulin tyrosine ligase-like family, member 13 [Homo... 
TTLL6                 0.561   tubulin tyrosine ligase-like family, member 6 isofo...
TTLL7                 0.350   tubulin tyrosine ligase-like family, member 7 
TTLL5                 0.216   tubulin tyrosine ligase-like family, member 5 
TTLL11                0.214   tubulin tyrosine ligase-like family, member 11 a [H...
TTLL4                 0.184   tubulin tyrosine ligase-like family, member 4 [Homo...
TTLL2                 0.178   tubulin tyrosine ligase-like family, member 2 
TTLL11                0.176   tubulin tyrosine ligase-like family, member 11 b [Ho...
TTLL6                 0.170   tubulin tyrosine ligase-like family, member 6 isofo...
TTLL1                 0.163   tubulin tyrosine ligase-like family, member 1 
TTLL9                 0.128   tubulin tyrosine ligase-like family, member 9 
TTLL10                0.071   tubulin tyrosine ligase-like family, member 10 isof...
TTLL3                 0.071   tubulin tyrosine ligase-like family, member 3 [Homo...
TTL                   0.064   tubulin tyrosine ligase 
TTLL8                 0.056   tubulin tyrosine ligase-like family, member 8 [Homo...
TTLL10                0.044   tubulin tyrosine ligase-like family, member 10 isof...
TTLL12                0.031   tubulin tyrosine ligase-like family, member 12 [Homo...
ZNF449                0.007   zinc finger protein 449 
C7orf58               0.007   hypothetical protein LOC79974 isoform 2 
C7orf58               0.007   hypothetical protein LOC79974 isoform 1 
MARCH1                0.007   membrane-associated RING-CH protein I 
USP16                 0.005   ubiquitin specific protease 16 isoform b 
USP16                 0.005   ubiquitin specific protease 16 isoform a 
USP16                 0.005   ubiquitin specific protease 16 isoform a 
HDC                   0.005   histidine decarboxylase 
TBCE                  0.005   beta-tubulin cofactor E 
TBCE                  0.005   beta-tubulin cofactor E 
NEK2                  0.005   NIMA-related kinase 2 
STK3                  0.005   serine/threonine kinase 3 
NAV3                  0.004   neuron navigator 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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