Guide to the Human Genome
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Name: CLCN7 Sequence: fasta or formatted (805aa) NCBI GI: 14149607
Description:

chloride channel 7 isoform a

Referenced in:

Chloride Channels

Other entries for this name:
alt prot [781aa] chloride channel 7 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         66           3
 C cysteine            1.1          9           1
 D aspartate           4.1         33           2
 E glutamate           4.7         38           3
 F phenylalanine       5.8         47           2
 G glycine             8.1         65           3
 H histidine           2.2         18           1
 I isoleucine          5.8         47           1
 K lysine              3.6         29           2
 L leucine            11.6         93           3
 M methionine          2.6         21           2
 N asparagine          3.2         26           1
 P proline             5.0         40           2
 Q glutamine           2.6         21           1
 R arginine            6.0         48           3
 S serine              7.3         59           2
 T threonine           4.7         38           1
 V valine              9.3         75           3
 W tryptophan          1.4         11           1
 Y tyrosine            2.6         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chloride channel 7 isoform a 
CLCN7                 0.961   chloride channel 7 isoform b 
CLCN6                 0.320   chloride channel 6 isoform ClC-6a 
CLCN6                 0.167   chloride channel 6 isoform ClC-6c 
CLCN5                 0.150   chloride channel 5 isoform a 
CLCN5                 0.150   chloride channel 5 isoform a 
CLCN5                 0.150   chloride channel 5 isoform b 
CLCN4                 0.145   chloride channel 4 
CLCN3                 0.145   chloride channel 3 isoform b 
CLCN3                 0.142   chloride channel 3 isoform e 
CLCN2                 0.106   chloride channel 2 
CLCN1                 0.101   chloride channel 1, skeletal muscle 
CLCN6                 0.098   chloride channel 6 isoform ClC-6d 
CLCN6                 0.098   chloride channel 6 isoform ClC-6b 
CLCNKB                0.090   chloride channel Kb 
CLCNKA                0.078   chloride channel Ka isoform 1 
CLCNKA                0.077   chloride channel Ka isoform 2 
MLLT4                 0.004   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.004   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.004   myeloid/lymphoid or mixed-lineage leukemia (trithora...
OTUD7A                0.004   OTU domain containing 7A 
MYO16                 0.004   myosin heavy chain Myr 8 
SLITRK2               0.004   SLIT and NTRK-like family, member 2 
SLITRK2               0.004   SLIT and NTRK-like family, member 2 
SLITRK2               0.004   SLIT and NTRK-like family, member 2 
SLITRK2               0.004   SLIT and NTRK-like family, member 2 
SLITRK2               0.004   SLIT and NTRK-like family, member 2 
SLITRK2               0.004   SLIT and NTRK-like family, member 2 
SLITRK2               0.004   SLIT and NTRK-like family, member 2 
SLITRK2               0.004   SLIT and NTRK-like family, member 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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