Guide to the Human Genome
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Name: PNRC2 Sequence: fasta or formatted (139aa) NCBI GI: 8923295
Description:

proline-rich nuclear receptor coactivator 2

Referenced in:

Nuclear Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8          8           3
 C cysteine            0.0          0           0
 D aspartate           0.7          1           1
 E glutamate           3.6          5           1
 F phenylalanine       3.6          5           1
 G glycine             6.5          9           3
 H histidine           2.2          3           1
 I isoleucine          2.2          3           1
 K lysine             10.8         15           3
 L leucine             5.8          8           2
 M methionine          2.9          4           1
 N asparagine         10.8         15           2
 P proline             8.6         12           2
 Q glutamine          10.1         14           3
 R arginine            3.6          5           1
 S serine             11.5         16           2
 T threonine           2.2          3           1
 V valine              5.0          7           1
 W tryptophan          2.2          3           1
 Y tyrosine            2.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proline-rich nuclear receptor coactivator 2 
LOC100131261          0.981   PREDICTED: similar to hCG1728885 
LOC100131261          0.981   PREDICTED: similar to hCG1728885 
LOC100131261          0.958   PREDICTED: hypothetical protein LOC100131261 
PNRC1                 0.231   proline-rich nuclear receptor coactivator 1 
SMN2                  0.034   survival of motor neuron 2, centromeric isoform d [H...
SMN2                  0.034   survival of motor neuron 2, centromeric isoform a [H...
SMN1                  0.034   survival of motor neuron 1, telomeric isoform d [Homo...
LMOD2                 0.034   leiomodin 2 (cardiac) 
GLIS3                 0.030   GLIS family zinc finger 3 isoform a 
FBRSL1                0.030   fibrosin-like 1 
GLIS3                 0.030   GLIS family zinc finger 3 isoform b 
FGFR1OP2              0.027   FGFR1 oncogene partner 2 
CHD9                  0.019   chromodomain helicase DNA binding protein 9 
N4BP2L2               0.019   phosphonoformate immuno-associated protein 5 isofor...
C20orf151             0.019   hypothetical protein LOC140893 
ZC3H18                0.019   zinc finger CCCH-type containing 18 
PRPF38B               0.015   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
FOXO4                 0.015   forkhead box O4 
NKTR                  0.015   natural killer-tumor recognition sequence 
TRDN                  0.015   triadin 
C6orf222              0.015   hypothetical protein LOC389384 
MINK1                 0.011   misshapen/NIK-related kinase isoform 4 
MINK1                 0.011   misshapen/NIK-related kinase isoform 2 
MINK1                 0.011   misshapen/NIK-related kinase isoform 3 
MINK1                 0.011   misshapen/NIK-related kinase isoform 1 
OBFC2B                0.011   oligonucleotide/oligosaccharide-binding fold contain...
C14orf102             0.011   hypothetical protein LOC55051 isoform 1 
MBTD1                 0.011   mbt domain containing 1 
FAM178A               0.011   hypothetical protein LOC55719 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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