Guide to the Human Genome
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Name: RBM22 Sequence: fasta or formatted (420aa) NCBI GI: 8922328
Description:

RNA binding motif protein 22

Referenced in:

RNA-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         28           2
 C cysteine            3.1         13           1
 D aspartate           5.5         23           2
 E glutamate           5.7         24           3
 F phenylalanine       3.6         15           1
 G glycine             7.4         31           2
 H histidine           1.9          8           1
 I isoleucine          4.3         18           1
 K lysine              6.9         29           2
 L leucine             6.4         27           2
 M methionine          2.9         12           1
 N asparagine          4.3         18           1
 P proline            11.4         48           5
 Q glutamine           3.8         16           2
 R arginine            6.4         27           2
 S serine              4.5         19           2
 T threonine           6.4         27           2
 V valine              4.3         18           2
 W tryptophan          1.0          4           1
 Y tyrosine            3.6         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 22 
SFRS15                0.050   splicing factor, arginine/serine-rich 15 isoform 3 ...
SFRS15                0.050   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.050   splicing factor, arginine/serine-rich 15 isoform 1 [...
RBM16                 0.047   RNA-binding motif protein 16 
DAZAP1                0.045   DAZ associated protein 1 isoform a 
DAZAP1                0.045   DAZ associated protein 1 isoform b 
SF3B4                 0.035   splicing factor 3b, subunit 4 
WBP11                 0.035   WW domain binding protein 11 
SFPQ                  0.033   splicing factor proline/glutamine rich (polypyrimidin...
DIAPH2                0.031   diaphanous 2 isoform 12C 
DIAPH2                0.031   diaphanous 2 isoform 156 
WASL                  0.031   Wiskott-Aldrich syndrome gene-like protein 
APBB1IP               0.031   amyloid beta (A4) precursor protein-binding, family ...
PRR12                 0.031   proline rich 12 
TNRC4                 0.031   trinucleotide repeat containing 4 
ABI3                  0.031   NESH protein isoform 2 
ABI3                  0.031   NESH protein isoform 1 
WASF2                 0.030   WAS protein family, member 2 
SNRPC                 0.030   small nuclear ribonucleoprotein polypeptide C 
ENAH                  0.029   enabled homolog isoform a 
ENAH                  0.029   enabled homolog isoform b 
WIPF2                 0.029   WIRE protein 
PRPF40B               0.029   Huntingtin interacting protein C isoform 1 
DIAPH1                0.028   diaphanous 1 isoform 2 
DIAPH1                0.028   diaphanous 1 isoform 1 
PRPF40B               0.028   Huntingtin interacting protein C isoform 2 
FMNL1                 0.028   formin-like 1 
FMN1                  0.027   formin 1 
FMN2                  0.027   formin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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