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Search of human proteins with 8922122
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8922122 elaC homolog 1 [Homo sapiens]
(363 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8922122 elaC homolog 1 [Homo sapiens] 732 0.0
gi|145553959 elaC homolog 2 [Homo sapiens] 60 4e-09
gi|7706427 cleavage and polyadenylation specific factor 3, 73kDa... 32 0.89
gi|209862859 DEP domain containing 5 isoform 3 [Homo sapiens] 32 1.2
gi|7662222 DEP domain containing 5 isoform 1 [Homo sapiens] 32 1.2
gi|169215894 PREDICTED: similar to hCG1732289 [Homo sapiens] 31 1.5
gi|169215721 PREDICTED: similar to hCG1732289 [Homo sapiens] 31 1.5
gi|169215507 PREDICTED: similar to hCG1732289 [Homo sapiens] 31 1.5
gi|10092691 tight junction protein 3 [Homo sapiens] 30 2.6
gi|41872673 NIMA-related kinase 1 [Homo sapiens] 30 3.4
gi|13376142 nonhomologous end-joining factor 1 [Homo sapiens] 30 4.4
gi|119943100 propionyl Coenzyme A carboxylase, beta polypeptide ... 29 7.5
gi|194306644 BCSC-1 isoform 1 [Homo sapiens] 29 7.5
gi|38195080 BCSC-1 isoform 1 [Homo sapiens] 29 7.5
gi|46909600 a disintegrin and metalloproteinase domain 15 isofor... 28 9.8
gi|46909598 a disintegrin and metalloproteinase domain 15 isofor... 28 9.8
gi|46909596 a disintegrin and metalloproteinase domain 15 isofor... 28 9.8
gi|46909594 a disintegrin and metalloproteinase domain 15 isofor... 28 9.8
gi|46909592 a disintegrin and metalloproteinase domain 15 isofor... 28 9.8
gi|46909590 a disintegrin and metalloproteinase domain 15 isofor... 28 9.8
gi|10092677 pyridoxal phosphatase [Homo sapiens] 28 9.8
gi|148806872 lupus brain antigen 1 [Homo sapiens] 28 9.8
>gi|8922122 elaC homolog 1 [Homo sapiens]
Length = 363
Score = 732 bits (1890), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MSMDVTFLGTGAAYPSPTRGASAVVLRCEGECWLFDCGEGTQTQLMKSQLKAGRITKIFI 60
MSMDVTFLGTGAAYPSPTRGASAVVLRCEGECWLFDCGEGTQTQLMKSQLKAGRITKIFI
Sbjct: 1 MSMDVTFLGTGAAYPSPTRGASAVVLRCEGECWLFDCGEGTQTQLMKSQLKAGRITKIFI 60
Query: 61 THLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFHYVV 120
THLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFHYVV
Sbjct: 61 THLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFHYVV 120
Query: 121 HELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTILLDSEENSYLLFDDEQFVVKAFRL 180
HELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTILLDSEENSYLLFDDEQFVVKAFRL
Sbjct: 121 HELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTILLDSEENSYLLFDDEQFVVKAFRL 180
Query: 181 FHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQDVLK 240
FHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQDVLK
Sbjct: 181 FHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQDVLK 240
Query: 241 KPIVGRKICILGDCSGVVGDGGVKLCFEADLLIHEATLDDAQMDKAKEHGHSTPQMAATF 300
KPIVGRKICILGDCSGVVGDGGVKLCFEADLLIHEATLDDAQMDKAKEHGHSTPQMAATF
Sbjct: 241 KPIVGRKICILGDCSGVVGDGGVKLCFEADLLIHEATLDDAQMDKAKEHGHSTPQMAATF 300
Query: 301 AKLCRAKRLVLTHFSQRYKPVALAREGETDGIAELKKQAESVLDLQEVTLAEDFMVISIP 360
AKLCRAKRLVLTHFSQRYKPVALAREGETDGIAELKKQAESVLDLQEVTLAEDFMVISIP
Sbjct: 301 AKLCRAKRLVLTHFSQRYKPVALAREGETDGIAELKKQAESVLDLQEVTLAEDFMVISIP 360
Query: 361 IKK 363
IKK
Sbjct: 361 IKK 363
>gi|145553959 elaC homolog 2 [Homo sapiens]
Length = 826
Score = 59.7 bits (143), Expect = 4e-09
Identities = 81/327 (24%), Positives = 129/327 (39%), Gaps = 81/327 (24%)
Query: 4 DVTFLGTGAAYPSPTRGASAVVLRCEGEC-WLFDCGEGTQTQLMKS-----QLKAGRITK 57
++ FLGTG+A P R SA ++ + L DCGEGT QL + G +
Sbjct: 482 EIIFLGTGSAIPMKIRNVSATLVNISPDTSLLLDCGEGTFGQLCRHYGDQVDRVLGTLAA 541
Query: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVSK-QPIEIYGPVGLRDFIWRTMELSHTELVF 116
+F++HLH DH GLP +L S+ P+ + P L+ ++ + +
Sbjct: 542 VFVSHLHADHHTGLPSILLQRERALASLGKPLHPLLVVAPNQLKAWLQQ----------Y 591
Query: 117 HYVVHELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTILLDSEENSYLLFDDEQFVVK 176
H E++ PA+ L+E A + S P E+ + LL + D E+F
Sbjct: 592 HNQCQEVLHHISMIPAKCLQEGAEI----SSPAVERLISSLLRT-------CDLEEFQTC 640
Query: 177 AFRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQ 236
R H +FG ++V +G VV +G T+ +
Sbjct: 641 LVR--HCKHAFGCALVH--------------------------TSGWKVVY-SGDTMPCE 671
Query: 237 DVLKKPIVGRKICILGDCSGVVGDGGVKLCFEADLLIHEATLDDAQMDKAKEHGHSTPQM 296
+++ +G L EA L E L++ ++K HST
Sbjct: 672 ALVR-----------------MGKDATLLIHEATL---EDGLEEEAVEKT----HSTTSQ 707
Query: 297 AATFAKLCRAKRLVLTHFSQRYKPVAL 323
A + A+ ++L HFSQRY V L
Sbjct: 708 AISVGMRMNAEFIMLNHFSQRYAKVPL 734
Score = 45.8 bits (107), Expect = 6e-05
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 22 SAVVLRCEGECWLFDCGEGTQTQLMKSQLKAGRITKIFITHLHGDHFFGLPGLLCTI 78
+A+ + E +LF+CGEG Q + + +LK R+ IF+T +H + GL G++ T+
Sbjct: 72 AALYVFSEFNRYLFNCGEGVQRLMQEHKLKVARLDNIFLTRMHWSNVGGLSGMILTL 128
>gi|7706427 cleavage and polyadenylation specific factor 3, 73kDa
[Homo sapiens]
Length = 684
Score = 32.0 bits (71), Expect = 0.89
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 20 GASAVVLRCEGECWLFDCG-----EGTQTQLMKSQLKAGRITKIFITHLHGDHFFGLPGL 74
G S ++L +G + DCG EG + I + I+H H DH LP
Sbjct: 24 GRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWF 83
Query: 75 LCTISLQSGSMVSKQPIEIY 94
L S + + ++ IY
Sbjct: 84 LQKTSFKGRTFMTHATKAIY 103
>gi|209862859 DEP domain containing 5 isoform 3 [Homo sapiens]
Length = 1594
Score = 31.6 bits (70), Expect = 1.2
Identities = 38/174 (21%), Positives = 62/174 (35%), Gaps = 19/174 (10%)
Query: 10 TGAAYPSPTRGASAVV-LRCEGECWLFDCGEGTQTQLMKSQLKAGRITKIFITHLHGD-- 66
TG S +G S + E WL + EG QTQ M + + + ITH G+
Sbjct: 1180 TGVQLLSEQKGLSPYCFISAEVVHWLVNHVEGIQTQAMAIDIMQKMLEEQLITHASGEAW 1239
Query: 67 --HFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFI-----WRTMELSHTELVFHYV 119
+G + + +QP + G+ DF W + ELV +
Sbjct: 1240 RTFIYGFYFYKIVTDKEPDRVAMQQPATTWHTAGVDDFASFQRKWFEVAFVAEELVHSEI 1299
Query: 120 VHELVPTADQCPAEELKEFAHVNRADSPPKE---------EQGRTILLDSEENS 164
L+P PA + +R+ + + RT+ LD + N+
Sbjct: 1300 PAFLLPWLPSRPASYASRHSSFSRSFGGRSQAAALLAATVPEQRTVTLDVDVNN 1353
>gi|7662222 DEP domain containing 5 isoform 1 [Homo sapiens]
Length = 1572
Score = 31.6 bits (70), Expect = 1.2
Identities = 38/174 (21%), Positives = 62/174 (35%), Gaps = 19/174 (10%)
Query: 10 TGAAYPSPTRGASAVV-LRCEGECWLFDCGEGTQTQLMKSQLKAGRITKIFITHLHGD-- 66
TG S +G S + E WL + EG QTQ M + + + ITH G+
Sbjct: 1158 TGVQLLSEQKGLSPYCFISAEVVHWLVNHVEGIQTQAMAIDIMQKMLEEQLITHASGEAW 1217
Query: 67 --HFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFI-----WRTMELSHTELVFHYV 119
+G + + +QP + G+ DF W + ELV +
Sbjct: 1218 RTFIYGFYFYKIVTDKEPDRVAMQQPATTWHTAGVDDFASFQRKWFEVAFVAEELVHSEI 1277
Query: 120 VHELVPTADQCPAEELKEFAHVNRADSPPKE---------EQGRTILLDSEENS 164
L+P PA + +R+ + + RT+ LD + N+
Sbjct: 1278 PAFLLPWLPSRPASYASRHSSFSRSFGGRSQAAALLAATVPEQRTVTLDVDVNN 1331
>gi|169215894 PREDICTED: similar to hCG1732289 [Homo sapiens]
Length = 370
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 284 DKAKEHGHSTPQMAATFAKLC-RAKRLVLTHFSQRYKPVALAREGETDGIAELKKQAESV 342
D A+ H PQ +LC K++V+T + +A + G+ LKK V
Sbjct: 201 DAAQAHPGPHPQNELQQIRLCFERKKMVITEVWDNVAEMHMALNNQATGLLNLKKDIRGV 260
Query: 343 LDLQE 347
LD E
Sbjct: 261 LDQME 265
>gi|169215721 PREDICTED: similar to hCG1732289 [Homo sapiens]
Length = 391
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 284 DKAKEHGHSTPQMAATFAKLC-RAKRLVLTHFSQRYKPVALAREGETDGIAELKKQAESV 342
D A+ H PQ +LC K++V+T + +A + G+ LKK V
Sbjct: 222 DAAQAHPGPHPQNELQQIRLCFERKKMVITEVWDNVAEMHMALNNQATGLLNLKKDIRGV 281
Query: 343 LDLQE 347
LD E
Sbjct: 282 LDQME 286
>gi|169215507 PREDICTED: similar to hCG1732289 [Homo sapiens]
Length = 490
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 284 DKAKEHGHSTPQMAATFAKLC-RAKRLVLTHFSQRYKPVALAREGETDGIAELKKQAESV 342
D A+ H PQ +LC K++V+T + +A + G+ LKK V
Sbjct: 321 DAAQAHPGPHPQNELQQIRLCFERKKMVITEVWDNVAEMHMALNNQATGLLNLKKDIRGV 380
Query: 343 LDLQE 347
LD E
Sbjct: 381 LDQME 385
>gi|10092691 tight junction protein 3 [Homo sapiens]
Length = 952
Score = 30.4 bits (67), Expect = 2.6
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 185 PSFGFSVV---EKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTI 233
P GF + + RPG + + D+ VP GPA G+L+ G +V+ NGV++
Sbjct: 37 PRRGFGIAISGGRDRPG--GSMVVSDV-VPGGPAEGRLQTGDHIVMVNGVSM 85
>gi|41872673 NIMA-related kinase 1 [Homo sapiens]
Length = 1258
Score = 30.0 bits (66), Expect = 3.4
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 20/116 (17%)
Query: 113 ELVFHYVVHE----LVPTAD--QCPAEELKEFAHVNRADSPPKEEQGRTILL-------D 159
E FH VVH LVP QC EE FA + + PPK + ++L+ D
Sbjct: 984 EPFFHKVVHSEHLNLVPQVQSVQCSPEE--SFAFRSHSHLPPKNKNKNSLLIGLSTGLFD 1041
Query: 160 SEENSYLLFDDEQFVVKAFRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPA 215
+ L + K FR +P+ G R L +++D + GP+
Sbjct: 1042 ANNPKMLRTCSLPDLSKLFRTLMDVPTVG-----DVRQDNLEIDEIEDENIKEGPS 1092
>gi|13376142 nonhomologous end-joining factor 1 [Homo sapiens]
Length = 299
Score = 29.6 bits (65), Expect = 4.4
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 109 LSHTELVFHYVVHELV--PTADQCPAEELKEFAHVNRADSPPKEEQGRTILLDS------ 160
L+ LV +++ L+ A QC EL H+ + +E G T++ D
Sbjct: 125 LASPSLVSQHLIRPLMGMSLALQCQVRELATLLHMKDLEIQDYQESGATLIRDRLKTEPF 184
Query: 161 EENSYLLFDDEQFVVK 176
EENS+L EQF+++
Sbjct: 185 EENSFL----EQFMIE 196
>gi|119943100 propionyl Coenzyme A carboxylase, beta polypeptide
[Homo sapiens]
Length = 539
Score = 28.9 bits (63), Expect = 7.5
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 24/133 (18%)
Query: 158 LDSEENSYLLFDDEQFVVKAFRLFHRIPSFGFSVVEKKRP--------GKLNAQKL---- 205
L + E LL D FV + HR FG + + K P G++N + +
Sbjct: 64 LTARERISLLLDPGSFVESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFS 123
Query: 206 KDLGVPPGPAYGKLKNGISVVLENGVTISPQDVLKKPIVGRKICILGDCSGV-VGDGGVK 264
+D V G G I +++ +T+ P++G L D G + +G
Sbjct: 124 QDFTVFGGSLSGAHAQKICKIMDQAITVG------APVIG-----LNDSGGARIQEGVES 172
Query: 265 LCFEADLLIHEAT 277
L AD+ + T
Sbjct: 173 LAGYADIFLRNVT 185
>gi|194306644 BCSC-1 isoform 1 [Homo sapiens]
Length = 786
Score = 28.9 bits (63), Expect = 7.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 27 RCEGECWLFDCGEGTQTQLMKSQLKAGRITKIFIT 61
R + C+ F GEGT T L+K +A T FIT
Sbjct: 411 RQKHRCFSFGIGEGTSTSLIKGIARASGGTSEFIT 445
>gi|38195080 BCSC-1 isoform 1 [Homo sapiens]
Length = 786
Score = 28.9 bits (63), Expect = 7.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 27 RCEGECWLFDCGEGTQTQLMKSQLKAGRITKIFIT 61
R + C+ F GEGT T L+K +A T FIT
Sbjct: 411 RQKHRCFSFGIGEGTSTSLIKGIARASGGTSEFIT 445
>gi|46909600 a disintegrin and metalloproteinase domain 15 isoform 6
preproprotein [Homo sapiens]
Length = 863
Score = 28.5 bits (62), Expect = 9.8
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 71 LPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFHYVVHELVPTADQC 130
LPG C +S + K P P+G R R ++ T+ V ELV AD
Sbjct: 174 LPGHTCALSWRESVHTQKPPEH---PLGQRHIRRRRDVVTETKTV------ELVIVADHS 224
Query: 131 PAEELKEFAHV 141
A++ ++F H+
Sbjct: 225 EAQKYRDFQHL 235
>gi|46909598 a disintegrin and metalloproteinase domain 15 isoform 5
preproprotein [Homo sapiens]
Length = 862
Score = 28.5 bits (62), Expect = 9.8
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 71 LPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFHYVVHELVPTADQC 130
LPG C +S + K P P+G R R ++ T+ V ELV AD
Sbjct: 174 LPGHTCALSWRESVHTQKPPEH---PLGQRHIRRRRDVVTETKTV------ELVIVADHS 224
Query: 131 PAEELKEFAHV 141
A++ ++F H+
Sbjct: 225 EAQKYRDFQHL 235
>gi|46909596 a disintegrin and metalloproteinase domain 15 isoform 4
preproprotein [Homo sapiens]
Length = 838
Score = 28.5 bits (62), Expect = 9.8
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 71 LPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFHYVVHELVPTADQC 130
LPG C +S + K P P+G R R ++ T+ V ELV AD
Sbjct: 174 LPGHTCALSWRESVHTQKPPEH---PLGQRHIRRRRDVVTETKTV------ELVIVADHS 224
Query: 131 PAEELKEFAHV 141
A++ ++F H+
Sbjct: 225 EAQKYRDFQHL 235
>gi|46909594 a disintegrin and metalloproteinase domain 15 isoform 3
preproprotein [Homo sapiens]
Length = 839
Score = 28.5 bits (62), Expect = 9.8
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 71 LPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFHYVVHELVPTADQC 130
LPG C +S + K P P+G R R ++ T+ V ELV AD
Sbjct: 174 LPGHTCALSWRESVHTQKPPEH---PLGQRHIRRRRDVVTETKTV------ELVIVADHS 224
Query: 131 PAEELKEFAHV 141
A++ ++F H+
Sbjct: 225 EAQKYRDFQHL 235
>gi|46909592 a disintegrin and metalloproteinase domain 15 isoform 1
preproprotein [Homo sapiens]
Length = 772
Score = 28.5 bits (62), Expect = 9.8
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 71 LPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFHYVVHELVPTADQC 130
LPG C +S + K P P+G R R ++ T+ V ELV AD
Sbjct: 174 LPGHTCALSWRESVHTQKPPEH---PLGQRHIRRRRDVVTETKTV------ELVIVADHS 224
Query: 131 PAEELKEFAHV 141
A++ ++F H+
Sbjct: 225 EAQKYRDFQHL 235
>gi|46909590 a disintegrin and metalloproteinase domain 15 isoform 2
preproprotein [Homo sapiens]
Length = 814
Score = 28.5 bits (62), Expect = 9.8
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 71 LPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFHYVVHELVPTADQC 130
LPG C +S + K P P+G R R ++ T+ V ELV AD
Sbjct: 174 LPGHTCALSWRESVHTQKPPEH---PLGQRHIRRRRDVVTETKTV------ELVIVADHS 224
Query: 131 PAEELKEFAHV 141
A++ ++F H+
Sbjct: 225 EAQKYRDFQHL 235
>gi|10092677 pyridoxal phosphatase [Homo sapiens]
Length = 296
Score = 28.5 bits (62), Expect = 9.8
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 241 KPIVGRKICILGDCSGVVGDGGVKLCFEADLLIHEATLDDAQMDKAKEHGHSTPQMAATF 300
+ ++GR +L DC GV+ +G + +LL A A + + + P++A F
Sbjct: 13 RDVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRF 72
Query: 301 AKL 303
A+L
Sbjct: 73 ARL 75
>gi|148806872 lupus brain antigen 1 [Homo sapiens]
Length = 2375
Score = 28.5 bits (62), Expect = 9.8
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 264 KLCFEADLLIHEATLDDAQMDKAKEHGHSTPQMAATFAKLCRAKRLVLTHFSQRYKPVA- 322
KL + A EA +K KE M A +KL +LV +R A
Sbjct: 1308 KLSYSASQFYLEAAAKYLSANKMKE-------MMAVLSKLDIEDQLVFLKSRKRLAEAAD 1360
Query: 323 -LAREGETDGIAELKKQAESVLDLQEVTLAEDF 354
L REG + A L KQ +L+ +T +DF
Sbjct: 1361 LLNREGRREEAALLMKQHGCLLEAARLTADKDF 1393
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,588,672
Number of Sequences: 37866
Number of extensions: 674579
Number of successful extensions: 1227
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1216
Number of HSP's gapped (non-prelim): 31
length of query: 363
length of database: 18,247,518
effective HSP length: 104
effective length of query: 259
effective length of database: 14,309,454
effective search space: 3706148586
effective search space used: 3706148586
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.