Guide to the Human Genome
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Name: ELAC1 Sequence: fasta or formatted (363aa) NCBI GI: 8922122
Description:

elaC homolog 1

Referenced in:

Prostate
RNases and RNA Stability
tRNA Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         25           2
 C cysteine            2.5          9           1
 D aspartate           5.5         20           2
 E glutamate           7.2         26           2
 F phenylalanine       5.0         18           2
 G glycine             8.3         30           2
 H histidine           3.3         12           1
 I isoleucine          5.2         19           1
 K lysine              7.4         27           2
 L leucine            10.7         39           2
 M methionine          2.2          8           1
 N asparagine          1.4          5           1
 P proline             5.2         19           2
 Q glutamine           4.1         15           1
 R arginine            4.1         15           1
 S serine              5.8         21           1
 T threonine           5.2         19           1
 V valine              7.7         28           2
 W tryptophan          0.6          2           1
 Y tyrosine            1.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   elaC homolog 1 
ELAC2                 0.050   elaC homolog 2 
CPSF3                 0.010   cleavage and polyadenylation specific factor 3, 73kDa...
DEPDC5                0.010   DEP domain containing 5 isoform 3 
DEPDC5                0.010   DEP domain containing 5 isoform 1 
LOC388849             0.008   PREDICTED: similar to hCG1732289 
LOC388849             0.008   PREDICTED: similar to hCG1732289 
LOC388849             0.008   PREDICTED: similar to hCG1732289 
TJP3                  0.007   tight junction protein 3 
NEK1                  0.007   NIMA-related kinase 1 
NHEJ1                 0.007   nonhomologous end-joining factor 1 
PCCB                  0.006   propionyl Coenzyme A carboxylase, beta polypeptide ...
VWA5A                 0.006   BCSC-1 isoform 1 
VWA5A                 0.006   BCSC-1 isoform 1 
ADAM15                0.004   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.004   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.004   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.004   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.004   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.004   a disintegrin and metalloproteinase domain 15 isofor...
PDXP                  0.004   pyridoxal phosphatase 
LBA1                  0.004   lupus brain antigen 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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