Guide to the Human Genome
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Name: LPCAT4 Sequence: fasta or formatted (524aa) NCBI GI: 87116681
Description:

lysophosphatidylcholine acyltransferase 4

Referenced in:

Lipid Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         49           2
 C cysteine            1.5          8           1
 D aspartate           3.2         17           1
 E glutamate           4.8         25           2
 F phenylalanine       5.2         27           2
 G glycine             7.8         41           2
 H histidine           2.1         11           1
 I isoleucine          2.7         14           1
 K lysine              3.2         17           2
 L leucine            14.3         75           3
 M methionine          0.6          3           1
 N asparagine          2.5         13           2
 P proline             8.6         45           2
 Q glutamine           5.3         28           2
 R arginine            6.5         34           3
 S serine              7.1         37           2
 T threonine           4.2         22           2
 V valine              7.8         41           2
 W tryptophan          1.7          9           1
 Y tyrosine            1.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lysophosphatidylcholine acyltransferase 4 
LPCAT2                0.340   lysophosphatidylcholine acyltransferase 2 
LPCAT1                0.283   lysophosphatidylcholine acyltransferase 1 
AGPAT9                0.038   1-acylglycerol-3-phosphate O-acyltransferase 9 [Homo...
AGPAT6                0.033   lysophosphatidic acid acyltransferase zeta precursor...
AGPAT2                0.018   1-acylglycerol-3-phosphate O-acyltransferase 2 isofor...
AGPAT1                0.012   1-acylglycerol-3-phosphate O-acyltransferase 1 
AGPAT1                0.012   1-acylglycerol-3-phosphate O-acyltransferase 1 [Homo...
MTHFR                 0.008   5,10-methylenetetrahydrofolate reductase 
AUP1                  0.008   ancient ubiquitous protein 1 
AMOTL2                0.007   angiomotin like 2 
LOC392275             0.006   PREDICTED: similar to sphingomyelin phosphodiestera...
LOC392275             0.006   PREDICTED: similar to sphingomyelin phosphodiestera...
ADAMTS19              0.005   ADAM metallopeptidase with thrombospondin type 1 mo...
EN1                   0.005   engrailed homeobox 1 
IGHMBP2               0.005   immunoglobulin mu binding protein 2 
C4A                   0.005   complement component 4A preproprotein 
C4B                   0.005   complement component 4B preproprotein 
LOC100293534          0.005   PREDICTED: similar to complement component 4B (Chil...
LOC100294156          0.005   PREDICTED: similar to C4A protein isoform 1 
TMEM176A              0.004   hepatocellular carcinoma-associated antigen 112 [Hom...
MUC6                  0.004   mucin 6, gastric 
MBD3                  0.004   methyl-CpG binding domain protein 3 
MOGAT3                0.004   monoacylglycerol O-acyltransferase 3 
ZNF394                0.004   zinc finger protein 394 
SIGLEC10              0.004   sialic acid binding Ig-like lectin 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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