Guide to the Human Genome
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Name: ZNF394 Sequence: fasta or formatted (561aa) NCBI GI: 31982909
Description:

zinc finger protein 394

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         27           2
 C cysteine            3.9         22           1
 D aspartate           3.6         20           1
 E glutamate          10.7         60           2
 F phenylalanine       3.4         19           1
 G glycine             6.2         35           2
 H histidine           5.3         30           2
 I isoleucine          2.5         14           1
 K lysine              6.6         37           1
 L leucine             8.9         50           2
 M methionine          0.9          5           1
 N asparagine          3.2         18           2
 P proline             5.3         30           2
 Q glutamine           6.4         36           2
 R arginine            8.4         47           2
 S serine              9.4         53           2
 T threonine           4.1         23           1
 V valine              3.6         20           2
 W tryptophan          1.2          7           1
 Y tyrosine            1.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 394 
ZSCAN12               0.323   zinc finger and SCAN domain containing 12 
ZNF397                0.314   zinc finger protein 397 isoform 1 
ZNF397OS              0.291   zinc finger protein 397 opposite strand 
ZSCAN21               0.277   zinc finger protein 38 
ZNF483                0.267   zinc finger protein 483 isoform a 
ZNF436                0.253   zinc finger protein 436 
ZNF436                0.253   zinc finger protein 436 
ZNF3                  0.249   zinc finger protein 3 isoform 2 
ZNF165                0.241   zinc finger protein 165 
ZNF167                0.238   zinc finger protein 167 isoform 1 
ZNF34                 0.235   zinc finger protein 34 
ZNF189                0.234   zinc finger protein 189 isoform 1 
ZNF852                0.232   PREDICTED: zinc finger protein 852 
ZNF852                0.229   PREDICTED: zinc finger protein 852 
ZNF852                0.229   PREDICTED: zinc finger protein 852 
ZFP3                  0.228   zinc finger protein-3 
ZNF420                0.226   zinc finger protein 420 
ZNF250                0.225   zinc finger protein 250 isoform a 
ZNF250                0.224   zinc finger protein 250 isoform b 
ZNF286A               0.224   zinc finger protein 286 
ZNF286A               0.224   zinc finger protein 286 
LOC344065             0.223   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.223   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.223   PREDICTED: similar to zinc finger protein 570 [Homo...
ZNF502                0.223   zinc finger protein 502 
ZNF502                0.223   zinc finger protein 502 
ZNF502                0.223   zinc finger protein 502 
ZNF502                0.223   zinc finger protein 502 
ZNF85                 0.223   zinc finger protein 85 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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