PRTG 36424

Name: PRTG	Sequence: fasta or formatted (1150aa)		NCBI GI: 83281200
Description: protogenin		Referenced in: Fibronectin Family
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.2 83 2 C cysteine 1.3 15 1 D aspartate 3.9 45 2 E glutamate 5.7 66 2 F phenylalanine 2.3 27 3 G glycine 5.7 66 2 H histidine 2.6 30 2 I isoleucine 6.0 69 2 K lysine 4.4 51 3 L leucine 9.0 104 7 M methionine 2.3 26 1 N asparagine 4.3 50 2 P proline 7.0 81 6 Q glutamine 3.8 44 2 R arginine 5.2 60 2 S serine 9.4 108 3 T threonine 7.0 81 2 V valine 7.5 86 2 W tryptophan 1.4 16 1 Y tyrosine 3.7 42 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 protogenin IGDCC4 0.282 immunoglobulin superfamily, DCC subclass, member 4 [... IGDCC3 0.198 putative neuronal cell adhesion molecule LOC343052 0.138 PREDICTED: similar to hCG1996527 LOC343052 0.137 PREDICTED: similar to hCG1996527 LOC343052 0.136 PREDICTED: similar to hCG1996527 NEO1 0.115 neogenin homolog 1 DCC 0.111 deleted in colorectal carcinoma PTPRD 0.085 protein tyrosine phosphatase, receptor type, D isofo... PTPRD 0.084 protein tyrosine phosphatase, receptor type, D isofo... PTPRD 0.083 protein tyrosine phosphatase, receptor type, D isofor... PTPRS 0.073 protein tyrosine phosphatase, receptor type, sigma ... PTPRF 0.073 protein tyrosine phosphatase, receptor type, F isof... PTPRS 0.071 protein tyrosine phosphatase, receptor type, sigma ... PTPRF 0.071 protein tyrosine phosphatase, receptor type, F isof... SDK2 0.068 sidekick 2 SDK1 0.067 sidekick 1 ROBO2 0.064 roundabout, axon guidance receptor, homolog 2 isofo... ROBO2 0.064 roundabout, axon guidance receptor, homolog 2 isofor... CNTN4 0.064 contactin 4 isoform a precursor PXDN 0.064 peroxidasin ROBO1 0.063 roundabout 1 isoform b PTPRD 0.063 protein tyrosine phosphatase, receptor type, D isof... ROBO1 0.063 roundabout 1 isoform a PTPRD 0.063 protein tyrosine phosphatase, receptor type, D isofo... L1CAM 0.062 L1 cell adhesion molecule isoform 3 precursor [Homo... L1CAM 0.062 L1 cell adhesion molecule isoform 2 precursor ROBO1 0.061 roundabout 1 isoform d ROBO1 0.061 roundabout 1 isoform c LOC642132 0.061 PREDICTED: similar to roundabout 1 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.