Guide to the Human Genome
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Name: RARB Sequence: fasta or formatted (336aa) NCBI GI: 7706625
Description:

retinoic acid receptor, beta isoform 2

Referenced in:

Nuclear Receptors

Other entries for this name:
alt prot [448aa] retinoic acid receptor, beta isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         15           2
 C cysteine            3.6         12           1
 D aspartate           5.4         18           2
 E glutamate           7.7         26           2
 F phenylalanine       3.0         10           1
 G glycine             4.5         15           1
 H histidine           2.1          7           1
 I isoleucine          6.5         22           2
 K lysine              7.7         26           4
 L leucine            11.3         38           2
 M methionine          3.3         11           1
 N asparagine          3.6         12           1
 P proline             5.4         18           2
 Q glutamine           4.2         14           1
 R arginine            5.7         19           2
 S serine              7.7         26           3
 T threonine           8.3         28           2
 V valine              3.6         12           1
 W tryptophan          0.3          1           1
 Y tyrosine            1.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinoic acid receptor, beta isoform 2 
RARB                  1.000   retinoic acid receptor, beta isoform 1 
RARA                  0.822   retinoic acid receptor, alpha isoform 1 
RARA                  0.822   retinoic acid receptor, alpha isoform 2 
RARA                  0.822   retinoic acid receptor, alpha isoform 1 
RARG                  0.785   retinoic acid receptor, gamma isoform 2 
RARG                  0.785   retinoic acid receptor, gamma isoform 1 
RARA                  0.697   retinoic acid receptor, alpha isoform 4 
THRA                  0.272   thyroid hormone receptor, alpha isoform 1 
THRB                  0.252   thyroid hormone receptor, beta 
THRB                  0.252   thyroid hormone receptor, beta 
THRB                  0.252   thyroid hormone receptor, beta 
THRA                  0.232   thyroid hormone receptor, alpha isoform 2 
RXRG                  0.217   retinoid X receptor, gamma isoform a 
RXRA                  0.197   retinoid X receptor, alpha 
NR1H3                 0.194   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H3                 0.194   nuclear receptor subfamily 1, group H, member 3 iso...
RXRB                  0.187   retinoid X receptor, beta 
NR1H2                 0.184   nuclear receptor subfamily 1, group H, member 2 [Hom...
NR4A1                 0.183   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR4A1                 0.183   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR4A2                 0.183   nuclear receptor subfamily 4, group A, member 2 [Homo...
NR4A3                 0.169   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.169   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.169   nuclear receptor subfamily 4, group A, member 3 isof...
NR1D2                 0.160   nuclear receptor subfamily 1, group D, member 2 iso...
NR1D2                 0.160   nuclear receptor subfamily 1, group D, member 2 iso...
PPARA                 0.160   peroxisome proliferative activated receptor, alpha [...
PPARA                 0.160   peroxisome proliferative activated receptor, alpha [H...
ESRRG                 0.154   estrogen-related receptor gamma isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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