Guide to the Human Genome
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Name: NR4A1 Sequence: fasta or formatted (598aa) NCBI GI: 27894344
Description:

nuclear receptor subfamily 4, group A, member 1

Referenced in:

Nuclear Receptors

Other entries for this name:
alt mRNA [598aa] nuclear receptor subfamily 4, group A, member 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         50           2
 C cysteine            3.3         20           1
 D aspartate           4.8         29           1
 E glutamate           4.7         28           2
 F phenylalanine       5.5         33           2
 G glycine             7.5         45           2
 H histidine           1.8         11           1
 I isoleucine          2.7         16           2
 K lysine              4.5         27           1
 L leucine            10.9         65           3
 M methionine          1.0          6           1
 N asparagine          1.0          6           1
 P proline            10.7         64           4
 Q glutamine           4.7         28           2
 R arginine            4.8         29           3
 S serine             11.5         69           4
 T threonine           4.8         29           1
 V valine              4.0         24           2
 W tryptophan          0.7          4           1
 Y tyrosine            2.5         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear receptor subfamily 4, group A, member 1 [Hom... 
NR4A1                 1.000   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR4A2                 0.487   nuclear receptor subfamily 4, group A, member 2 [Homo...
NR4A3                 0.403   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.403   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.403   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.203   nuclear receptor subfamily 4, group A, member 3 isof...
RARG                  0.150   retinoic acid receptor, gamma isoform 1 
RARG                  0.146   retinoic acid receptor, gamma isoform 2 
RARB                  0.139   retinoic acid receptor, beta isoform 1 
RARA                  0.138   retinoic acid receptor, alpha isoform 1 
RARA                  0.138   retinoic acid receptor, alpha isoform 1 
RXRA                  0.135   retinoid X receptor, alpha 
RARA                  0.135   retinoic acid receptor, alpha isoform 2 
RXRB                  0.131   retinoid X receptor, beta 
RXRG                  0.130   retinoid X receptor, gamma isoform a 
ESRRG                 0.128   estrogen-related receptor gamma isoform 2 
ESRRG                 0.128   estrogen-related receptor gamma isoform 2 
ESRRG                 0.128   estrogen-related receptor gamma isoform 1 
ESRRG                 0.128   estrogen-related receptor gamma isoform 2 
NR2F1                 0.126   nuclear receptor subfamily 2, group F, member 1 [Homo...
NR2F2                 0.126   nuclear receptor subfamily 2, group F, member 2 isof...
ESRRB                 0.125   estrogen-related receptor beta 
ESRRA                 0.125   estrogen-related receptor alpha 
NR2F6                 0.115   nuclear receptor subfamily 2, group F, member 6 [Hom...
ESR1                  0.114   estrogen receptor alpha isoform 4 
ESR1                  0.114   estrogen receptor alpha isoform 3 
ESR1                  0.114   estrogen receptor alpha isoform 2 
ESR1                  0.114   estrogen receptor alpha isoform 1 
NR1H3                 0.111   nuclear receptor subfamily 1, group H, member 3 iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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