Guide to the Human Genome
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Name: RHOT1 Sequence: fasta or formatted (618aa) NCBI GI: 75750470
Description:

ras homolog gene family, member T1 isoform 3

Referenced in:

Mitochondria
Rho and Rac

Other entries for this name:
alt prot [659aa] ras homolog gene family, member T1 isoform 2
alt prot [691aa] ras homolog gene family, member T1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         34           2
 C cysteine            2.9         18           1
 D aspartate           6.5         40           3
 E glutamate           6.6         41           2
 F phenylalanine       4.5         28           2
 G glycine             3.6         22           1
 H histidine           2.6         16           2
 I isoleucine          6.1         38           2
 K lysine              6.8         42           2
 L leucine            10.2         63           3
 M methionine          1.8         11           1
 N asparagine          3.9         24           2
 P proline             5.2         32           3
 Q glutamine           4.4         27           1
 R arginine            4.5         28           2
 S serine              6.0         37           2
 T threonine           6.8         42           2
 V valine              7.0         43           2
 W tryptophan          1.0          6           1
 Y tyrosine            4.2         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ras homolog gene family, member T1 isoform 3 
RHOT1                 0.984   ras homolog gene family, member T1 isoform 2 
RHOT1                 0.941   ras homolog gene family, member T1 isoform 1 
RHOT2                 0.586   ras homolog gene family, member T2 
RHOF                  0.034   ras homolog gene family, member F 
RHOD                  0.032   ras homolog D 
RHOB                  0.031   ras homolog gene family, member B 
RHOU                  0.029   ras homolog gene family, member U 
RHOG                  0.028   ras homolog gene family, member G 
CDC42                 0.028   cell division cycle 42 isoform 2 
CDC42                 0.028   cell division cycle 42 isoform 1 
CDC42                 0.028   cell division cycle 42 isoform 1 
RHOQ                  0.028   ras-like protein TC10 
RAC2                  0.027   ras-related C3 botulinum toxin substrate 2 
RAC1                  0.027   ras-related C3 botulinum toxin substrate 1 isoform Ra...
RHOC                  0.027   ras homolog gene family, member C precursor 
RHOC                  0.027   ras homolog gene family, member C precursor 
RHOC                  0.027   ras homolog gene family, member C precursor 
RHOA                  0.026   ras homolog gene family, member A 
DIRAS3                0.026   DIRAS family, GTP-binding RAS-like 3 
RHOJ                  0.026   ras homolog gene family, member J 
RHOV                  0.025   ras homolog gene family, member V 
REM1                  0.025   RAS-like GTP-binding protein REM 
RAC3                  0.024   ras-related C3 botulinum toxin substrate 3 (rho famil...
RASD2                 0.023   RASD family, member 2 
DIRAS2                0.023   Di-Ras2 
RND3                  0.022   ras homolog gene family, member E 
RAP2B                 0.022   RAP2B, member of RAS oncogene family 
GEM                   0.022   GTP-binding mitogen-induced T-cell protein 
RASL12                0.022   RAS-like, family 12 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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