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Search of human proteins with 75709187
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|75709187 cleavage stimulation factor subunit 3 isoform 2
[Homo sapiens]
(103 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|75709187 cleavage stimulation factor subunit 3 isoform 2 [Hom... 213 3e-56
gi|4557495 cleavage stimulation factor subunit 3 isoform 1 [Homo... 155 6e-39
gi|75709189 cleavage stimulation factor subunit 3 isoform 3 [Hom... 89 6e-19
gi|156938331 PRP39 pre-mRNA processing factor 39 homolog [Homo s... 41 2e-04
gi|124256489 crooked neck-like 1 protein [Homo sapiens] 37 0.004
gi|55770906 XPA binding protein 2 [Homo sapiens] 32 0.082
gi|9998944 amiloride-sensitive cation channel 1, neuronal isofor... 32 0.11
gi|34452695 amiloride-sensitive cation channel 1, neuronal isofo... 32 0.11
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens] 30 0.53
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens] 30 0.53
gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens] 30 0.53
gi|21536349 amiloride-sensitive cation channel 2, neuronal isofo... 27 2.6
gi|42560248 POU domain, class 5, transcription factor 1 isoform ... 27 3.5
gi|189095266 Rh blood group D antigen isoform 2 [Homo sapiens] 27 3.5
gi|20336225 Rh blood group D antigen isoform 1 [Homo sapiens] 27 3.5
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 27 3.5
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 27 3.5
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 27 3.5
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 27 3.5
gi|21070997 stromal interaction molecule 1 precursor [Homo sapiens] 27 4.5
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 26 5.9
gi|154689769 folliculin interacting protein 2 [Homo sapiens] 26 7.7
gi|116812588 polycystic kidney disease 2-like 2 [Homo sapiens] 26 7.7
gi|116235456 ring finger protein 214 [Homo sapiens] 26 7.7
gi|116235451 ring finger protein 214 [Homo sapiens] 26 7.7
>gi|75709187 cleavage stimulation factor subunit 3 isoform 2 [Homo
sapiens]
Length = 103
Score = 213 bits (542), Expect = 3e-56
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ 60
MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
Sbjct: 1 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ 60
Query: 61 FPSSGRFWKLYIEAEVTILFYFFLYQYCSIHCSDRKQVRNIAN 103
FPSSGRFWKLYIEAEVTILFYFFLYQYCSIHCSDRKQVRNIAN
Sbjct: 61 FPSSGRFWKLYIEAEVTILFYFFLYQYCSIHCSDRKQVRNIAN 103
>gi|4557495 cleavage stimulation factor subunit 3 isoform 1 [Homo
sapiens]
Length = 717
Score = 155 bits (392), Expect = 6e-39
Identities = 75/76 (98%), Positives = 76/76 (100%)
Query: 1 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ 60
MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
Sbjct: 1 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ 60
Query: 61 FPSSGRFWKLYIEAEV 76
FPSSGRFWKLYIEAE+
Sbjct: 61 FPSSGRFWKLYIEAEI 76
>gi|75709189 cleavage stimulation factor subunit 3 isoform 3 [Homo
sapiens]
Length = 44
Score = 89.4 bits (220), Expect = 6e-19
Identities = 43/43 (100%), Positives = 43/43 (100%)
Query: 1 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQ 43
MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQ
Sbjct: 1 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQ 43
>gi|156938331 PRP39 pre-mRNA processing factor 39 homolog [Homo
sapiens]
Length = 669
Score = 41.2 bits (95), Expect = 2e-04
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 7 TEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREA-QNQPIDKARKTYERLVAQFPSSG 65
TE A + PE +K K +E NP D W L++ Q + ARK ++R +P
Sbjct: 71 TETEANFPPE-YEKFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDRFFIHYPYCY 129
Query: 66 RFWKLYIEAE 75
+WK Y + E
Sbjct: 130 GYWKKYADLE 139
>gi|124256489 crooked neck-like 1 protein [Homo sapiens]
Length = 848
Score = 36.6 bits (83), Expect = 0.004
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 22 EKKLEENPYDLDAWSILIREAQNQ-PIDKARKTYERLVAQFP--SSGRFWKLYIEAEVTI 78
E++++ NP++ DAW +R ++ + R+ YER +A P R WK YI +
Sbjct: 481 EEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINY 540
Query: 79 LFY 81
Y
Sbjct: 541 ALY 543
>gi|55770906 XPA binding protein 2 [Homo sapiens]
Length = 855
Score = 32.3 bits (72), Expect = 0.082
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 22 EKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEA 74
E+++ N + + W I Q P + + YER + P S + W Y++A
Sbjct: 25 EEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKA 77
>gi|9998944 amiloride-sensitive cation channel 1, neuronal isoform 2
[Homo sapiens]
Length = 512
Score = 32.0 bits (71), Expect = 0.11
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 7 TEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGR 66
++ +A+Y+ +K K+EK + EN LD + EA N + +K YE + A G
Sbjct: 380 SKTSAKYLEKKFNKSEKYISENILVLD----IFFEALNYETIEQKKAYE-VAALLGDIGG 434
Query: 67 FWKLYIEAEVTILFYFFLYQY 87
L+I A + + F Y Y
Sbjct: 435 QMGLFIGASILTILELFDYIY 455
>gi|34452695 amiloride-sensitive cation channel 1, neuronal isoform
1 [Homo sapiens]
Length = 563
Score = 32.0 bits (71), Expect = 0.11
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 7 TEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGR 66
++ +A+Y+ +K K+EK + EN LD + EA N + +K YE + A G
Sbjct: 431 SKTSAKYLEKKFNKSEKYISENILVLD----IFFEALNYETIEQKKAYE-VAALLGDIGG 485
Query: 67 FWKLYIEAEVTILFYFFLYQY 87
L+I A + + F Y Y
Sbjct: 486 QMGLFIGASILTILELFDYIY 506
>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 29.6 bits (65), Expect = 0.53
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 2 SGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILI--REAQNQPIDKARKTYERLVA 59
SG ++A E V +K E ++++ Y+ + L+ R ++ I + ++TYE L+A
Sbjct: 442 SGYRKDQEALEAVKRLKEKLEAEMKKLNYEENKEESLLEKRRQLSRDIGRLKETYEALLA 501
Query: 60 QFPS 63
+FP+
Sbjct: 502 RFPN 505
>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 29.6 bits (65), Expect = 0.53
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 2 SGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILI--REAQNQPIDKARKTYERLVA 59
SG ++A E V +K E ++++ Y+ + L+ R ++ I + ++TYE L+A
Sbjct: 442 SGYRKDQEALEAVKRLKEKLEAEMKKLNYEENKEESLLEKRRQLSRDIGRLKETYEALLA 501
Query: 60 QFPS 63
+FP+
Sbjct: 502 RFPN 505
>gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 29.6 bits (65), Expect = 0.53
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 2 SGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILI--REAQNQPIDKARKTYERLVA 59
SG ++A E V +K E ++++ Y+ + L+ R ++ I + ++TYE L+A
Sbjct: 442 SGYRKDQEALEAVKRLKEKLEAEMKKLNYEENKEESLLEKRRQLSRDIGRLKETYEALLA 501
Query: 60 QFPS 63
+FP+
Sbjct: 502 RFPN 505
>gi|21536349 amiloride-sensitive cation channel 2, neuronal isoform
b [Homo sapiens]
Length = 528
Score = 27.3 bits (59), Expect = 2.6
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 7 TEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGR 66
++ +A+Y+ +K K+E+ + EN LD + E N + +K YE + G
Sbjct: 383 SKASAKYLAKKFNKSEQYIGENILVLD----IFFEVLNYETIEQKKAYE-IAGLLGDIGG 437
Query: 67 FWKLYIEAEVTILFYFFLYQY 87
L+I A + + F Y Y
Sbjct: 438 QMGLFIGASILTVLELFDYAY 458
>gi|42560248 POU domain, class 5, transcription factor 1 isoform 1
[Homo sapiens]
Length = 360
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 2 SGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQ 43
+ DGA+ + P VK ++KLE+NP + L +E +
Sbjct: 106 NSDGASPEPCTVTPGAVKLEKEKLEQNPEESQDIKALQKELE 147
>gi|189095266 Rh blood group D antigen isoform 2 [Homo sapiens]
Length = 321
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 59 AQFPSSGR----FWKLYIEAEVTILFYFFLYQYCSI 90
+++P S R W L +EA + +LFYFF + S+
Sbjct: 3 SKYPRSVRRCLPLWALTLEAALILLFYFFTHYDASL 38
>gi|20336225 Rh blood group D antigen isoform 1 [Homo sapiens]
Length = 417
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 59 AQFPSSGR----FWKLYIEAEVTILFYFFLYQYCSI 90
+++P S R W L +EA + +LFYFF + S+
Sbjct: 3 SKYPRSVRRCLPLWALTLEAALILLFYFFTHYDASL 38
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARK-TYERLVA 59
+SG A + + ++ + E++LEE +++A S +R+A Q + + ER A
Sbjct: 1721 LSGRNALQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATQQAEQLSNELATERSTA 1780
Query: 60 QFPSSGR 66
Q S R
Sbjct: 1781 QKNESAR 1787
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARK-TYERLVA 59
+SG A + + ++ + E++LEE +++A S +R+A Q + + ER A
Sbjct: 1728 LSGRNALQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATQQAEQLSNELATERSTA 1787
Query: 60 QFPSSGR 66
Q S R
Sbjct: 1788 QKNESAR 1794
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARK-TYERLVA 59
+SG A + + ++ + E++LEE +++A S +R+A Q + + ER A
Sbjct: 1728 LSGRNALQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATQQAEQLSNELATERSTA 1787
Query: 60 QFPSSGR 66
Q S R
Sbjct: 1788 QKNESAR 1794
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARK-TYERLVA 59
+SG A + + ++ + E++LEE +++A S +R+A Q + + ER A
Sbjct: 1721 LSGRNALQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATQQAEQLSNELATERSTA 1780
Query: 60 QFPSSGR 66
Q S R
Sbjct: 1781 QKNESAR 1787
>gi|21070997 stromal interaction molecule 1 precursor [Homo sapiens]
Length = 685
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 8 EQAAEYVPEKVKKAEKKLEEN-----PYDLDAWSILIREAQNQPIDKARKTYER 56
E+ E V E ++KAEK+LE + P L W L E + Q + ++ E+
Sbjct: 318 EEELEQVREALRKAEKELESHSSWYAPEALQKWLQLTHEVEVQYYNIKKQNAEK 371
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 21 AEKKLEENPYDLDAWSILIR 40
A+K+L EN +DL+A S+L R
Sbjct: 2233 AQKRLSENAFDLEAMSMLNR 2252
>gi|154689769 folliculin interacting protein 2 [Homo sapiens]
Length = 1114
Score = 25.8 bits (55), Expect = 7.7
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 31 DLDAWSILIREAQNQPIDKARKTYERLVAQFPSS-----GRFWKLYIEAEVTILFYFFLY 85
D D WS+ + +Q + D + + LV+ SS + +KL++ A+
Sbjct: 1000 DTDKWSVQVATSQRKVTDNMKLGQDVLVSSQVSSLLQSILQLYKLHLPAD---------- 1049
Query: 86 QYCSIHCSDRKQ 97
+C +H DR Q
Sbjct: 1050 -FCIMHLEDRLQ 1060
>gi|116812588 polycystic kidney disease 2-like 2 [Homo sapiens]
Length = 613
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 56 RLVAQFPSSGRF---WKLYIEAEVTILFYFFLYQYCSIHC 92
RLVA+FP++G W+ Y V +L Y Y Y C
Sbjct: 249 RLVAEFPATGGILTSWQFY---SVKLLRYVSYYDYFIASC 285
>gi|116235456 ring finger protein 214 [Homo sapiens]
Length = 703
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 45 QPIDKARKTYERLVAQFPSSGR 66
QP+DK K E+L+ +FP +
Sbjct: 550 QPVDKLEKILEKLLTRFPQCNK 571
>gi|116235451 ring finger protein 214 [Homo sapiens]
Length = 703
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 45 QPIDKARKTYERLVAQFPSSGR 66
QP+DK K E+L+ +FP +
Sbjct: 550 QPVDKLEKILEKLLTRFPQCNK 571
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,807,930
Number of Sequences: 37866
Number of extensions: 142890
Number of successful extensions: 512
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 493
Number of HSP's gapped (non-prelim): 30
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.