VPS36 35141

Name: VPS36	Sequence: fasta or formatted (386aa)		NCBI GI: 71051598
Description: vacuolar protein sorting 36		Referenced in: ER, Golgi, and the Secretory Pathway
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.4 21 2 C cysteine 1.3 5 2 D aspartate 3.4 13 2 E glutamate 10.6 41 3 F phenylalanine 3.1 12 1 G glycine 6.5 25 2 H histidine 2.1 8 1 I isoleucine 6.5 25 1 K lysine 7.5 29 1 L leucine 11.7 45 3 M methionine 4.1 16 1 N asparagine 3.1 12 1 P proline 3.4 13 2 Q glutamine 4.7 18 2 R arginine 6.2 24 2 S serine 7.5 29 2 T threonine 4.1 16 1 V valine 6.0 23 2 W tryptophan 0.8 3 1 Y tyrosine 2.1 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vacuolar protein sorting 36 DSP 0.014 desmoplakin isoform I TRIM3 0.012 tripartite motif-containing 3 TRIM3 0.012 tripartite motif-containing 3 MYH11 0.011 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... MYH11 0.011 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... MYH11 0.011 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... MYH11 0.011 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... IQGAP2 0.011 IQ motif containing GTPase activating protein 2 [Ho... DZIP3 0.011 DAZ interacting protein 3, zinc finger ABCC12 0.011 ATP-binding cassette protein C12 SNF8 0.010 EAP30 subunit of ELL complex ZNF192 0.008 zinc finger protein 192 LRSAM1 0.008 leucine rich repeat and sterile alpha motif containi... LRSAM1 0.008 leucine rich repeat and sterile alpha motif containi... LRSAM1 0.008 leucine rich repeat and sterile alpha motif containi... RALBP1 0.007 ralA binding protein 1 CEP290 0.007 centrosomal protein 290kDa FAM184B 0.007 hypothetical protein LOC27146 MAST3 0.007 microtubule associated serine/threonine kinase 3 [H... PLEKHA4 0.005 pleckstrin homology domain containing family A memb... CTAGE1 0.005 cutaneous T-cell lymphoma-associated antigen 1 isofo... MED12L 0.005 mediator of RNA polymerase II transcription, subunit... LRRCC1 0.005 sodium channel associated protein 2 isoform b [Homo... LRRCC1 0.005 sodium channel associated protein 2 isoform a [Homo... CGNL1 0.005 cingulin-like 1 MYH13 0.005 myosin, heavy polypeptide 13, skeletal muscle [Homo... JMJD1C 0.005 jumonji domain containing 1C isoform a JMJD1C 0.005 jumonji domain containing 1C isoform b TRIM13 0.005 ret finger protein 2 isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.